Chenopodium album (lamb's quarters): 145604989
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Entry
145604989 CDS
T11950
Symbol
LOC145604989
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
calb
Chenopodium album (lamb's quarters)
Pathway
calb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145604989 (LOC145604989)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
calb03041
]
145604989 (LOC145604989)
Enzymes [BR:
calb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
145604989 (LOC145604989)
Spliceosome [BR:
calb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
145604989 (LOC145604989)
Complex B
145604989 (LOC145604989)
Complex C
U2 SnRNP specific factors
145604989 (LOC145604989)
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Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-GeneID:
145604989
NCBI-ProteinID:
XP_081517118
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All DBs
Position
2:85317494..85322256
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AA seq
773 aa
AA seq
DB search
MSKRKFGFEGFGINRQQTYNFERSQQQPQRLYTPPSSSRPHDHHEDTDVDNIDFDDDSNN
VSDAGNLAGDEEIDPLDAFMEGIHKEVSEAPPPKPKEKLDKYRDDDDDEDDPMESFLRAK
KDVGLTLASDALRAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIVLDKRKIEPITALDHSE
IDYEAFNKDFYEEKPSISGMSEQDVTEYRNALKIRVSGFDVPRPVKTFDDCGFPPPLMSA
ITKQGYEKPTNIQCQALPIVLSGSDIIGIAKTGSGKTAAFVLPMIVHIMDQPELGKGEGP
IGVICAPTRELAHQIYLETRKFAKPYGLRVSAVYGGMSKLDQFKELKAGAEIVVATPGRL
IDLLKMKALTLKRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILSDPVRVSVGEVGMANEDITQFVQVLPSDAEKLPWLLEKLQGMIDEGDVLVFASK
KASVDELESQLAQKGFKVASLHGDKDQASRMEILQKFKAGIYHVLIATDVAARGLDIKSI
KSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGEMVNSLIAAGQNVSV
ELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGRGGGGGGGGRGVRGVDFGLGIGYNTESN
NAPSQTPSRAAAVNSLRTGMMAQFKSSFVAASPDSQNQATNNSNVYANKRPAMTGFVSGG
TIGGDTNRPQATPTTNFTPALGGSIGGQNSDQKSNESSRERQRERRRPSGWDR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaaattcggcttcgaaggcttcggaatcaatcgccaacaaacctacaac
ttcgaacgatctcaacaacaacctcaacgcctctacactcctccttcttcttcgcgacct
catgaccaccacgaagataccgacgtcgacaacatcgacttcgacgacgatagcaataac
gtttccgacgccggaaatctcgccggcgatgaagaaattgatcctttggacgcttttatg
gagggaattcataaggaagtgagtgaagcgcccccgccgaagccgaaagagaagcttgat
aagtatagagatgatgatgatgatgaggatgatccaatggagagttttttgagggcaaag
aaagatgtagggttaacattggcgtcggatgcgcttcgagccgggtacgattccgatgag
gaggtttacgctgcggcgaaagcggttgatgctggaatggttgagtatgattctgatgat
aatccgattgtgcttgataagaggaagattgagcctattactgcattggatcatagtgag
attgattatgaggcgtttaataaggatttttatgaggaaaagccttcaatttctggcatg
agcgagcaggatgtcacagagtaccggaatgccttgaaaattcgtgtttctggttttgat
gttccaaggccagttaaaacttttgacgattgtggcttccctccaccactgatgagtgca
atcaccaaacaaggttatgaaaagcctaccaacatacaatgccaagctttaccaattgtg
ctgtcaggaagtgatattattggtatagcaaagactggttctggaaaaactgctgcgttt
gtgcttcctatgattgtgcatataatggatcagcctgagctgggcaaaggagaaggacca
atcggagtgatatgtgcacccaccagagaattagctcatcagatatatctggaaactaga
aaatttgcaaaaccttatgggttacgtgtttctgcagtctatggtgggatgtccaagctt
gatcagtttaaagaactcaaggcaggagcggagattgttgttgccactcctgggagactg
attgatttgctgaaaatgaaggcattaacattgaagagagcaacatatttggtgcttgat
gaggcggatcgaatgtttgaccttgggtttgagccacagataagatctattgttggtcag
atcaggccagaccgtcagactttactcttttcagcaacaatgccccgaaaagtggaaaag
ttggcaagagaaattctttctgatcctgtacgtgtgtcagtgggggaagtaggcatggca
aatgaagatattactcagtttgttcaagtgcttccttcagatgcagaaaagttaccttgg
ctcttagaaaagctgcaaggaatgattgatgaaggtgatgttttggtttttgcttccaaa
aaggcctctgtagatgaacttgagtcccagcttgcacagaaagggttcaaagttgcttct
cttcacggtgataaagatcaggcttctcggatggagattttgcagaaatttaaggctggg
atataccatgttcttattgctacagatgttgctgctcgaggtcttgacattaagtcgatc
aagtcagttgtcaactttgacattgcaaaagatatggatatgcatgtgcatcgcattggt
agaacaggtcgtgctggtgataaagacggagtcgcatacactcttatcacacagaaagag
gccaggttcgctggggaaatggtcaacagtttgatcgctgctggccagaatgtgtctgtg
gaactgatggatcttgccatgaaggatggaagattcaggtctaaacgtgatgcaaggaaa
ggaggtggaaagaagggaaaaggacgaggaggtggacgaggaggtggaggaggtggtggt
ggtcgaggtgttcgtggagtggattttggtttaggcattgggtataatacagaatccaac
aatgctccctctcaaactccaagtcgggctgctgcagttaattcacttaggactggtatg
atggcacagttcaagagcagctttgtggctgcttcacccgattctcagaatcaggcaact
aacaattcaaacgtgtatgccaacaagcgcccagctatgactggttttgtttcgggtggt
accattggtggggacaccaacagacctcaggcaacccctacaacaaatttcacgccagca
ttaggaggcagcatcggtggtcagaattctgatcagaagagcaatgaaagctccagagaa
aggcaaagggaaaggcgaaggccctcaggctgggatagatag
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