Chenopodium album (lamb's quarters): 145606684
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Entry
145606684 CDS
T11950
Symbol
LOC145606684
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03040
Spliceosome
calb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145606684 (LOC145606684)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
145606684 (LOC145606684)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
calb03041
]
145606684 (LOC145606684)
04121 Ubiquitin system [BR:
calb04121
]
145606684 (LOC145606684)
03400 DNA repair and recombination proteins [BR:
calb03400
]
145606684 (LOC145606684)
Enzymes [BR:
calb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
145606684 (LOC145606684)
Spliceosome [BR:
calb03041
]
Complex B
Other components
Prp19 complex
145606684 (LOC145606684)
Complex C
Prp19-CDC5 complex
145606684 (LOC145606684)
Ubiquitin system [BR:
calb04121
]
Ubiquitin ligases (E3)
U-box type E3
145606684 (LOC145606684)
DNA repair and recombination proteins [BR:
calb03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
145606684 (LOC145606684)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
DSE1_N
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_EIPR1
CFAP251_N
Beta-prop_SCAP
NBCH_WD40
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_DCAF4
U-box
PEP5_VPS11_N
ASA1
zf-Nse
KNTC1_N
Beta-prop_Vps41
Beta-prop_ACSF4
WD40_like
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
145606684
NCBI-ProteinID:
XP_081518628
LinkDB
All DBs
Position
23:complement(39048313..39057762)
Genome browser
AA seq
526 aa
AA seq
DB search
MNCSISGEVPEEPVVSKQSGLLFEKRLIERHISDYGKCPVTGEPLTMDDIVPVKAGKIVK
PRPVQGASIPGMIGMFQIEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQADERLRPMLGATGNAVHQPALSNGKRVSEEETLGPDGKKARMGISADTI
AELTDCNLELSQQRKKRTIPSTLASIEDLERYTQISSYPLHKTNKPGILSVDIQYSKDII
ATGGIDTNAVVFDRPSGQIVSTLSGHSKKVTSIKIVPQDESLVITGSADKTVRLWQGSDD
GNYDCRHVLKDHTAEVQAVTVHATNKYFVTASLDNSWCFYDLSSGLCLTQVTDSSGSEGY
TSAAFHPDGLILGTGTTDALVKIWDVKTQTNVAKFDGHTGPVTAMSFSENGYFLATAAHD
GVKLWDLRKLKNFRSFASPDPDTPTNYVDFDHSGSYLAVASSDIRVYQVASVKLEWNLIK
TLPDLSGTGKATCAKFGPDAKYIAVGSSDRNLRIFGLPGNDGAPES
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaattgctcaatttccggtgaagtaccggaagagccggttgtttccaagcaatctgga
cttctttttgagaagcgtctcatcgaacgtcacatttcggattatggaaaatgtccggtt
accggagagccattgacaatggacgatattgttccggtaaaagctggaaagattgtgaag
cccagacctgttcagggtgctagtattcctgggatgattggcatgttccaaattgaatgg
gatagtttgatgctttccaattttgctctggagcaacaattacatactgccaggcaagaa
ttgagtcatgctctctaccagcatgatgctgcttgccgtgtaattgcaaggctaaagaag
gagagagatgaggcaagatcgcttttggctcaagcagatgagaggctcagacctatgtta
ggggcaacaggcaatgcagtacatcaacctgcattgagcaatgggaaaagagtttctgag
gaagagactctgggccctgatggaaagaaagcccgaatgggaatttctgctgatactatc
gctgaactgactgattgcaacttggaactttcacagcagcgtaaaaagagaacaatacct
tctaccttggcttctattgaggatttggagcgctacacacagatctctagctatcccctt
cacaaaactaacaaacctggcattctatctgttgatatccaatattccaaggatatcatt
gccaccggggggattgatacaaatgctgtcgtctttgatcgaccttctggacagattgta
tctacactaagtggtcattcaaagaaggttaccagcatcaaaattgttccacaggatgaa
agtttagttataactggatctgcagacaagactgtaagattatggcaaggatcagatgat
ggtaattatgattgcaggcatgttctaaaagatcacacagcagaggtgcaagccgttacc
gttcatgcaactaacaaatactttgtaactgcttcccttgataattcatggtgcttctac
gatctttcaagcggtctctgtctcacacaggtgacagactcttcagggtctgagggatat
acatctgcggcttttcatccggatggtctcatccttggaacaggaacaacagatgctctt
gtcaagatttgggatgttaaaactcagactaatgttgccaaatttgacgggcacacaggt
cctgttacagccatgtctttctctgaaaatggatacttccttgcgactgcagctcatgat
ggtgtaaaactgtgggatctgcgtaaattgaagaatttccggtcctttgcctctcctgat
ccagacacaccaactaactatgttgatttcgaccatagcgggagttatcttgcagttgct
agttcagatataagagtataccaagttgcaagtgtcaagttagaatggaatcttatcaag
accctgcctgatttgtccggcacaggcaaagctacctgtgcgaaatttggtccagatgca
aaatacatagcagtaggatcatcggatagaaaccttcgaatatttggcttgccagggaat
gatggtgctcctgaatcttaa
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