KEGG   Chenopodium album (lamb's quarters): 145611737
Entry
145611737         CDS       T11950                                 
Symbol
LOC145611737
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
calb  Chenopodium album (lamb's quarters)
Pathway
calb03013  Nucleocytoplasmic transport
calb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:calb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    145611737 (LOC145611737)
  09122 Translation
   03013 Nucleocytoplasmic transport
    145611737 (LOC145611737)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:calb03019]
    145611737 (LOC145611737)
   03041 Spliceosome [BR:calb03041]
    145611737 (LOC145611737)
Messenger RNA biogenesis [BR:calb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     145611737 (LOC145611737)
Spliceosome [BR:calb03041]
 Complex C
  Other components
   EJC/TREX
    145611737 (LOC145611737)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    145611737 (LOC145611737)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd DSE1_N NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_EML WD40_RFWD3 Beta-prop_HPS5 Tricorn_2nd Beta-prop_DCAF12 WD40_MABP1-WDR62_1st TRM82_WD Beta-prop_IFT140_1st PAC11 Beta-prop_NUP159_NUP214 WDR90_beta-prop_4th CFAP251_N Beta-prop_WDR41 Beta-prop_Nup120_160 WD_LRWD1 PROPPIN Beta-prop_WDR11_1st DUF7099
Other DBs
NCBI-GeneID: 145611737
NCBI-ProteinID: XP_081523221
LinkDB
Position
24:10051491..10061474
AA seq 319 aa
MAQQKAEDATHPFKNLYSREYQGHKKKVHSVAWNCIGTKLASGSVDQTARVWHIEPTSHG
KVKDIEFKGHTDSVDQLCWDPKHADLLATASGDKTVRLWDARSGKCSQQTELSGENINIT
YKPDGAHIAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWDMTGEKFFLTTGNGTVEV
LAYPSLKALDTLTAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDIKEMLCVRTFVKLEWP
VRTISFNHTGEYIASASEDLFIDIASIETGRSIHQIPCRAAMNSVEWNPKSNLLAYAGDD
KNKYQADEGVFRIFGFQSA
NT seq 960 nt   +upstreamnt  +downstreamnt
atggcgcagcagaaagcggaggatgcaacacacccttttaagaatctctacagtagagaa
tatcagggtcacaaaaagaaggtgcattcagtggcttggaattgtattggaactaagctt
gcttcgggttcagttgatcaaacagctcgagtttggcacattgaacctactagtcatgga
aaggtaaaggatattgaatttaaggggcacactgatagtgtggaccagctctgttgggat
cccaaacacgcagatctacttgcaactgcatcaggggataaaacagttcgtttgtgggat
gctcgcagtggaaaatgctcacagcaaacagagcttagtggtgaaaatattaacattaca
tataaacctgatggggcacacatagctgttggaaacagggatgatgaattaacaattcta
gatgttagaaaatttaagccaattcacagacgcaagttcaattatgaggtaaatgagatt
gcatgggacatgactggagagaagttctttctgacaactggaaatggtactgttgaagtc
cttgcatacccctctttgaaagcacttgacacccttacggctcacactgctggttgctat
tgtattgcaattgatccactaggaagatattttgctgttggaagtgctgactcattggtc
agtctttgggatattaaagagatgctatgtgttcgaacatttgtaaaactcgagtggcct
gtccgaacaataagttttaatcacactggagagtatattgcttcagccagtgaagattta
ttcattgacatagcaagtattgaaactggacgatctatccatcaaataccttgtcgagcg
gcaatgaatagtgttgaatggaatccaaaatcaaacttacttgcatatgctggagatgat
aaaaacaaataccaagccgatgaaggtgttttccgcatatttgggttccagagtgcttag

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