Chenopodium album (lamb's quarters): 145613365
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Entry
145613365 CDS
T11950
Symbol
LOC145613365
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
145613365 (LOC145613365)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145613365 (LOC145613365)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
145613365 (LOC145613365)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_8
TPR_14
TPR_16
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
TPR_7
TPR_19
ARM_TT21_C
CFAP70_TPR_C
RMD1-3
DUF6584
BTAD
TPR_NPHP3
ARM_TT21_4th
NTF2
Motif
Other DBs
NCBI-GeneID:
145613365
NCBI-ProteinID:
XP_081524584
LinkDB
All DBs
Position
25:36594193..36612190
Genome browser
AA seq
1170 aa
AA seq
DB search
MNVTEENEEIQLKTLEELADSHPDDPSHHFNLGKLIWERGEEWREKAAEHFLKAAKLNPQ
NGEAFRFLGHYYTYVCLDTQRALKCYQRAVTLNPDDSQSGEALCDLLDKSGKESLEIAVC
REAFGKSPRAFWAFSRLGLLMVHQNKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRLGM
YTAAIKSYGRAMELEDSKAFAMIETGNIFLTLGSYRKGIEQFQHALEICPQSACAQYGLA
SGLLALSQECIKQGAYSWATSLLEEASEVAKNSAVLTSNMSCVWKLHADIQLTYAKSFPW
TEGGNLKGEEAFSRSLLSWRKTRQIAAVSAKCSYQRALHLAPWQANIYMDVAVALDHVCS
LQGSRETDLSSWKLSEKMLLGSLLLEGDNHEFWMALGCMSDHRALRQHAFIRGLHLDVSL
ASAWAFLGKLYKEEGDSQLGRQAFDRARSIDPSLSLPWAGMSADTLIRETASDEAYDSCL
RAVQILPLAEFQIGLAKLALRSNNLLSSEVFGSIRQALQCAPWYPESHNLNGLVSEARHD
YQSAIVSYQLARYAWKTSTLSLPHSHFVDISINLARALCKAENVLEAVQELEDLKERGFL
DVEGLQVYAISLWKLGKNDMSLAAAKDLATCVPTMKLSTAVASISLICCLLYSISGVGST
INNILQMPRELLQSAKVSFIISAVDAVDQSCQLQALVSSSRRILSTQEEIMEMHLLIALS
KLIRNGDGRSLSLQSGIDHLRKALHMYPNGISLRNMLGYLLLSRKQWENDHVVRRCCAVV
PFNSIKQDFRSAHEIIGAEAVACHATYSCKPKYSLSTCKYQNVHGASLMGLMQRWLRLEP
WNHNARYFLVLNFLQTACQAKYPQHLLNVLKRMTSVALTSQLSLNKTFERYKRFQLLMCS
SELNLLDGDMSSSVSLARDASNLSLSDAYTFFAHLQLCRAHAAEDNQTSLNVELTECLKL
KTNYPIGWISLKIIESRHRAQKGSTFLDSGFRDSIKEIKESENSWLAVYKLFCGLVSQWA
QDFLRAEEFLAEACSLAPTESCFFLCHGAICMELTKMQYGSQYLTMGIKSLKKAQGMSFI
QLPFVSLLLAQAEASLGSKLKWDSNLQLEWYSWSPETRPAELYFQMHLLALGSGTTSSQD
YGDPLNWVLRAIHLNPSCLRYWRVMRKLAE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttacggaggaaaacgaagaaattcaattaaaaaccctcgaagaactcgcggat
tctcacccagatgacccttcccaccattttaatcttgggaaattgatttgggaaagagga
gaagaatggagagagaaagctgcagagcattttctcaaggcagctaaattgaatccccaa
aatggagaagcattcagatttttaggtcattactatacttatgtttgtttggatacccag
agagctctcaaatgctatcagcgtgctgttacgcttaatcccgatgattcgcagtccggg
gaagcattgtgtgatttactggacaaaagtgggaaggagagcttagagattgctgtgtgc
agggaggcgttcgggaagtcaccccgtgccttttgggcattttccagactaggtttgctg
atggtgcatcaaaacaagtggtctgaggctgttcagagtcttcagcatgccatcagaggc
tacccaacctgtgccgatctctgggaagcattaggtcttgcctatcaacgacttggcatg
tatactgctgccattaagtcttacgggagagcaatggaattggaagattcaaaagccttt
gctatgatcgagactggaaatatttttctaacgcttggttcatatcggaaggggattgag
caatttcaacatgctctggagatatgccctcaaagtgcatgtgcacagtatgggctggct
tctgggcttcttgctctatcacaagaatgcattaagcagggtgcatattcatgggcaaca
tctctattggaggaggcatctgaagttgcaaaaaatagtgctgttttgaccagtaatatg
tcatgtgtatggaagctacatgctgatatacagcttacttatgcaaaatcatttccatgg
acagaaggtggtaatctaaagggcgaggaagccttttctaggtctcttctttcgtggaga
aaaacacgccaaattgctgctgtgtcagccaaatgttcctaccagcgtgctttgcactta
gctccatggcaagcaaatatatatatggatgttgctgtggctcttgatcatgtttgctct
ttacaggggagtcgtgaaactgatctgagctcctggaaattatctgagaagatgctgtta
ggaagcttgctacttgagggtgacaatcatgaattttggatggcattaggatgcatgtct
gatcatagggcattgagacaacatgcctttatccgagggttgcatttggatgtatctcta
gcttctgcatgggcttttctcggcaagctatacaaagaagaaggtgatagccaattggga
agacaagcctttgacagggctcgaagtatagatccttctctttcattgccatgggctggc
atgtcagcagatacgcttatcagggaaactgcatcagatgaggcttacgacagttgctta
cgagctgttcaaatattacctcttgctgagtttcagattggtcttgcaaaacttgctcta
cgttcaaacaacctattatcttcagaggtatttggatctatcaggcaagcgttgcagtgc
gctccttggtatcctgagtctcataatctgaatgggctagtttctgaggcacgacatgat
tatcaatctgctatcgtttcttatcagctagcacgttatgcatggaagacctctacactt
tccttgccccattctcattttgttgatatatcaattaatctggctagggcactctgcaag
gcagaaaatgtactagaagctgtgcaagaattggaagatctgaaggaaagaggttttctt
gacgttgaaggccttcaagtctatgctatatcattatggaaacttggcaagaatgatatg
tccctagctgctgctaaagatcttgctacatgtgttcccaccatgaagctgtccactgca
gtggcatctatttctttaatttgctgtcttctgtactccatttccggggtaggatcaact
atcaataacattttgcaaatgcccagggagctgcttcagagtgcaaaagtcagtttcatc
atatctgctgtagatgctgttgatcagagctgtcaattacaggctttagtctcaagtagc
cgccgtatcctttcaacacaggaagagattatggaaatgcatttgctgattgcactaagt
aaactaataagaaatggagatggacgttccctcagtctacaaagtggcatagatcatcta
agaaaggcgttgcatatgtaccccaatggaatttctttaagaaatatgctcggatatctt
ttgttatctcgcaaacaatgggaaaacgaccatgttgtaaggaggtgctgtgctgttgtt
ccgtttaactcaataaagcaagacttcagatctgcgcatgaaattattggtgccgaagct
gttgcttgtcatgctacttacagctgcaaaccaaaatactctctttcaacatgtaaatac
cagaatgtgcatggtgcatcactgatggggttaatgcagagatggcttcggcttgaaccg
tggaaccataatgcaagatactttctagtacttaattttcttcaaacagcatgccaagca
aaatatccgcaacaccttttgaacgtgctcaagcggatgacttctgtagctctcacgagt
cagttatctttgaataagacatttgaaagatataaaagatttcagctgcttatgtgttct
tctgagcttaatttgcttgatggagatatgtcaagcagtgtctctcttgcaagggatgca
tcaaacctttcgctttctgatgcctataccttttttgcccatttgcaattatgtcgcgct
catgctgctgaagataaccagacaagtctcaatgtagagcttacagagtgcttgaagctt
aaaacaaattaccctattggttggattagtcttaagattattgaatctcgtcatagagcc
cagaaaggttccacttttttagattctggctttagagatagtattaaagagatcaaggag
tcggagaattcatggttggctgtctacaaactgttttgtggtttagtttctcaatgggct
caagattttctacgtgcagaggagttccttgctgaagcttgttcactagcacctactgag
agctgcttcttcctgtgccatggtgctatctgcatggagcttacaaaaatgcaatatggc
tctcagtacctgacaatgggtataaaaagtcttaaaaaggcacaaggaatgtccttcatt
caattgccattcgtttcccttttgttggctcaagccgaggcaagccttggatcaaaattg
aagtgggatagtaacctccaattggaatggtattcttggtcaccagagacgagacctgct
gaactctattttcaaatgcatctgcttgcacttgggtctggaaccacatctagtcaagat
tatggagatccgctcaactgggttcttcgagctattcacttgaatccttcttgcttgagg
tattggagagtcatgcgcaagcttgctgagtga
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integrated database retrieval system
