Chenopodium album (lamb's quarters): 145616335
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Entry
145616335 CDS
T11950
Symbol
LOC145616335
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
145616335 (LOC145616335)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145616335 (LOC145616335)
Enzymes [BR:
calb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
145616335 (LOC145616335)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
145616335 (LOC145616335)
mRNA degradation factors
3'-5' decay
Ski complex
145616335 (LOC145616335)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
DUF1922
DUF1908
AAA_16
Motif
Other DBs
NCBI-GeneID:
145616335
NCBI-ProteinID:
XP_081527164
LinkDB
All DBs
Position
26:complement(3136816..3153870)
Genome browser
AA seq
1351 aa
AA seq
DB search
MDRVPIANDLSFRVGLTGHSGHLSIEPLPPVQSHNPLHDLPQFILPPAFPEETTESIKAY
IEEKYLVPRLDPDEFSPEKAGRDWDFDWFSKAKIPVEPSLPRTAVFPEWELPFRRRKGQE
QGIWEPQSIQVEISELTAGIEDSSALPRITGPAKDFVRGSLHSRPFHPGGLDGSQSLPRV
VPEGSLNGDWIREVLEGGPAEKIPPSFKQGLDSGDLKAYPSSWSVNECHASPKVVSDEKQ
SKLSLQFDDMFKRAWEDDFAEKDESDGIESEAESNESEIQVNKTEHEGDVPDVELLELDQ
ILSVDSAVLDIKADVKNEEGDNQGKESWAIRESNNGIADRFHELVPDLALEFPFELDRFQ
KEAIYYLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFTG
KFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVV
WEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKIIRVTGTTKRPVPLEHCLFYSGE
LYRICENEKMLEQGLKAAKDAYKKKNSNAARSGPTMHSGSAAGSGAANAQNRENSYRGKQ
KHSGSRNSGNFNGAGSGNFTSGSQPNLGLRRPDASLWLQLVNKLLKKSLLPVIIFCFSKN
RCDRSADSMMSIDLTSSLEKSEIRVFCDKAFSRLKGSDRNLPQILRVQSLLRRGIGVHHA
GLLPIVKEVIEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEYRQIIPGEY
TQMAGRAGRRGLDKFGTVIIMCRDEILEERDLRHVIVGHPTKLESQFRLTYIMILQLLRV
EELKIEDMLKRSFAEFHTQKKLPEKQQLLMLKLSHPAKAIECIKGEPSIEDYYKMYTEAE
GYLNQITEGVMQSHTAQQFLVPGRVVVVKSQTSQDHLLGVVVKAPSASLKKYIILVLKPD
LPPTMQSPTGSGAVLDIGSNKSGEGFLLLPKGKRALDDEYCSSVTARKGTGVINIKLPYQ
GVAAGVNYEVREVDNKEFLCICNCKIKIDQVRLLEDVSTAAYSKTVQQLSEKKPNGSKYP
PALDPKKDLKLKDMELVEAYHKWDKLLQNMTENKCHGCIKLDEHMKLVKEIFKYREEVNE
LTFQMSDKALQQMPDFHGRISVLKEIGCIDDDLVVQIKGRVACEMNSGEELICTECLFEN
QLENLEPEEAVAVMSAFVFQQKNTSEPSLTPKLSAAVQRLYDTAIRLGQLQASFQLPVDP
EEYARENLKFGLVEVVYEWAKGTEFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIM
GNSALYKKMEAASNAIKRDIVFAASLYITGI
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggatagagtaccaatagcaaacgatttgtcatttcgggtcgggctcacgggtcacagc
ggccatctttccatcgaacctcttcctccggttcaatcccacaatcctctccacgacctt
cctcaattcattcttccgcctgcatttcctgaggaaacaacagaatctattaaggcatat
atagaggaaaagtatttagtaccaagattggatcctgatgagttttcccctgaaaaagct
ggaagagactgggattttgactggttcagcaaggccaaaatacctgtggaaccatcatta
cctcggacagctgtgtttcccgaatgggagctgccatttaggcgccgtaaaggacaagaa
caaggaatttgggagcctcagtccatacaggtggagatttcagaattaaccgcagggata
gaggactctagtgctttgccacgaattacagggccagcaaaggactttgtgagggggagc
cttcacagtcgcccttttcatccaggtgggttagatggatctcagtctttgcccagggtt
gttcctgagggttcattgaatggtgactggattcgcgaggttcttgagggtggtcctgca
gaaaaaattcctccaagctttaagcaaggattggattccggtgatcttaaggcatatcct
tcttcatggagtgtgaatgagtgccacgcttctccaaaggttgtatcagatgagaagcag
agtaaactgtcactgcaatttgatgatatgttcaagagagcgtgggaagatgattttgct
gaaaaagatgagtctgatggtattgaatcagaagcagagtctaatgaatcagagatacaa
gtcaataaaactgaacatgaaggtgatgttccagatgttgaattattggaattagatcaa
attttgtctgtggactctgctgtgttggatataaaggcagatgtgaaaaatgaagaaggt
gacaatcagggtaaagagtcctgggctatccgtgaaagcaacaatggtatcgcagatcgt
tttcatgaacttgttcctgatttggctctcgagttcccgttcgaattagatagattccag
aaggaggctatctactatcttgaacgaggggaatctgtttttgtggcagctcatacatct
gctggaaagacagttgttgctgaatatgcatttgcattggcatcaaagcattgcactaga
gcagtgtacacagctccaatcaagacaatcagcaatcagaaatacagagatttcactgga
aaatttgatgttggccttctcactggtgatatcagcttgaggccagaggcgtcctgcctc
atcatgactactgaaatattgaggtcaatgttgtatagaggtgctgatattatccgtgac
attgagtgggttatatttgatgaagtgcattatgtcaatgatgctgaaagaggtgttgtc
tgggaagaagttataataatgcttccccgtcacattaattttgttctcctctctgccaca
gttccaaatacaatagaatttgccgattggattggcagaacaaagcaaaagatcatccgt
gttactgggaccactaagagaccagtcccattagagcactgcctgttttactctggagaa
ctttacagaatttgtgagaacgaaaaaatgttagaacagggcctgaaagctgctaaagat
gcatacaagaaaaagaattccaatgcagccagaagtggccctacaatgcattcgggatct
gcagctggttctggtgcggctaatgctcagaatcgtgaaaattcttatcgtgggaaacaa
aagcattctgggtctcgtaattctgggaacttcaatggggcgggctcagggaactttaca
agtggaagccagcccaacttgggcttgagaagaccagatgcttctttgtggttacaactt
gtgaacaagctcttaaaaaaatcacttttaccggtaatcatattttgcttttcaaagaac
cgttgtgatcgatcagctgatagtatgatgagtatagatcttaccagtagtttggaaaag
agtgaaattcgtgttttctgtgacaaagcattttcgcggctgaagggttctgaccgaaat
ttacctcagattctccgagttcaaagtctgcttcgtaggggtattggtgtccatcatgct
gggcttctccctatcgtgaaagaagttatcgaaatgctattctgccgtggtgtaattaag
gttctattttcaacggagacatttgctatgggtgtcaatgctcctgccagaacggttgtt
tttgatactttaagaaagtttgatggtaaggaatacaggcagataattccaggggaatat
acacagatggctggtcgtgctggcagaagagggcttgataagtttggaacagttataata
atgtgccgtgatgagattctagaagaacgagatctgagacatgttattgttggacatccc
accaaactcgaatctcaattccgactaacttatattatgatcttgcaattacttcgtgtt
gaagaattgaagatagaagacatgttaaagcggagctttgctgaatttcatactcaaaag
aagcttcctgaaaagcaacaacttctgatgttaaagctttcacatcccgcaaaagcaata
gaatgcataaagggtgaaccatctatcgaggattattataagatgtatacagaggctgag
ggttatttgaaccagataacagagggcgtcatgcagtctcatactgcacagcaattcctt
gtacctggaagagtggtagttgttaagtctcaaacgtctcaggaccatttacttggggtg
gtggtaaaagcaccgtcagccagcttgaagaagtacattattttagttttgaaacctgat
ttacctccaacaatgcaatcccctactggcagtggtgcggtccttgacatagggagtaac
aaatctggagaaggtttcttattgttgcccaagggaaaacgtgctttagatgatgaatac
tgttcttctgtcactgcacgcaagggtactggtgtaatcaacataaaattgccttaccag
ggggtggctgctggtgtgaattatgaggtcagagaagtggacaataaagagttcctttgc
atctgcaattgcaaaataaaaattgaccaagttcggcttcttgaagatgttagcactgct
gcctattcaaaaactgttcagcagctttctgaaaagaaacccaatgggagtaaatatcct
ccagcattggatcctaagaaggatctgaagctgaaagatatggaacttgttgaagcttac
cacaaatgggacaagctattgcagaacatgactgagaacaagtgccatggatgtataaag
ttggatgaacatatgaagttagttaaagagattttcaagtacagagaagaagtcaatgag
ttgacgtttcaaatgtctgacaaagcacttcaacagatgcctgactttcacggacggata
agtgttcttaaggaaattggctgtatagatgatgaccttgtagttcagatcaaaggacgt
gttgcttgtgaaatgaattccggagaggagcttatatgcactgagtgtttgtttgagaac
cagttagagaatctggaaccagaagaagcagttgctgtaatgtctgcatttgtttttcag
cagaagaatacttctgagccttctcttactcccaagctatctgctgcagtacagagatta
tacgatacagccatcagactgggccagttacaggcaagctttcaactcccagttgaccct
gaggagtatgctcgggaaaatcttaagtttggtcttgttgaagtggtttatgaatgggca
aagggcacagaatttgctgatatttgtgagctaacagatgttcctgaaggcttgatagtg
agaacaattgttcgacttgatgaaacatgtcgagaattcagaaatgctgcagctattatg
ggaaactctgctctgtacaagaaaatggaagctgcttcaaatgccatcaagcgtgatatc
gtttttgcagctagcttgtacatcacaggaatctga
DBGET
integrated database retrieval system
