Chenopodium album (lamb's quarters): 145616396
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Entry
145616396 CDS
T11950
Symbol
LOC145616396
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
calb
Chenopodium album (lamb's quarters)
Pathway
calb03030
DNA replication
calb03410
Base excision repair
calb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
145616396 (LOC145616396)
03410 Base excision repair
145616396 (LOC145616396)
03420 Nucleotide excision repair
145616396 (LOC145616396)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
calb03032
]
145616396 (LOC145616396)
03400 DNA repair and recombination proteins [BR:
calb03400
]
145616396 (LOC145616396)
Enzymes [BR:
calb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
145616396 (LOC145616396)
DNA replication proteins [BR:
calb03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
145616396 (LOC145616396)
DNA repair and recombination proteins [BR:
calb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
145616396 (LOC145616396)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
DNA_pol_B
zf-DPOE
DNA_pol_B_exo2
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
145616396
NCBI-ProteinID:
XP_081527230
LinkDB
All DBs
Position
26:553670..575210
Genome browser
AA seq
2218 aa
AA seq
DB search
MSGDFRRRDRKDDRKWKKKQQQLVRSAEDELESKLGFDVFTEDDKRLGWLLTLSSSSLQD
KDSGNLYSCVDLYFVTQDGSSFKVKYKFRPYFYAATKDKMETDVDAYLRRRYENDIANIE
IVEKEDLDLKNHLSGLRKSYLKISFDTVQQLMNVRNDLLRVVDRNQTKFEAAQAYESIIT
GKGQQRPHDFVDCITELREYDVPYHVRFCIDNDVRCGQWYDVSISSTGVVLDKRIDLLQR
AEVHVCAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGDDIEDLEYTPKP
EFEGYFRVTNVKNEVELLRHWFSHMLDVKPGIYVTYNGDFFDWPFLERRAAHHGLKMSDE
IGFQCDKVQGECRARFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMV
RFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLAAIIPMPPDEVLRKGSGTLCEMLL
MVQAFSANVICPNKHQSEPEKFYNNKLLESETYIGGHVECLESGVFRSDLPTSFKVDPSA
YQQLIDNLDRDLQYAIKVEGKMDLDSVANYDEVKGAIKEKLSCLRDEPVREESPLIYHLD
VAAMYPNIILTNRLQPPSIVTDEDCTACDFNRPGKTCLRTLEWVWRGETYTAKKSDYNHI
KRQIESELVDGNNGQFSKSFLDLPKADQQSKLKERLKKYCQKAYKRVLDKPSTELREAGI
CMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNPIKIQEAQDMVIVYDSLQL
AHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRPLELDTDGIWC
ALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVARNNTNDQYQTLKDPVNRTYATHSEC
SIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQA
EMFDKFLDGSTLEECYAAVAAVADRWLDLLDNQGNDIADSELLHYISESSTMSKSLADYG
EQKSCAVTTAKRLADFLGDTMVKDKGLLCQYIVASEPKGTPVSERAIPVAIFETETELMK
FYVRKWCKTSSDVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHK
KVREKEDKFRQKKIKDLFSSKRDSMAKTDAASNYVDNGIDKHKVLDLEDFGNSSGIGVGS
RPVVHNYEVNGQHSLQTTVLDHQSEHECTYSEDNSSIEVDKSEDYAGWLEQKKRKWKENR
EKRKRQRLSNAKTPKQGTGVSELHESLTNQKRNLGKTGVTSYFRRQELSLTSSYWQVLQL
VPSDCPGQFFAWVIVEGSMLKVPVTVPRVFYLNSKAPITEEFPGKRVNKILPHGHRSHNL
IEIIIDEKEFREESKRLMAHLADPEVEGIYETKVPPELNAVLQIGCVCKVDRAAKKRNLQ
AIWSLNELQMKTTAECRYLDNSLSFFYLYHSCCEGRAVYGGYFPAANMISFVVVDPHQNR
SLNPTNIKRFYHEVCQALSVESSISQGVMSYKVDYVVQNDEAERIMQKIISGHRPHNHRP
CLAIIECPNVHLLKSGIQVLNDLPCVSIPANARDSHYPALGWQTVAAKIALQRCAASSQW
LNERISLSRYAHVPLGNLELDWIIYTIDVFFSRALRDHQQVLWISDDGLPELGSFSEEDA
CFVDEVNQPVLVYPGAYRKVSVELKIHHLAVNALLKSSQINEIEGSGLHGFEQDTDPDTC
TSSEQYDFDESTFCGPAFRVLKQLVQRCLQDAITSGNVYADAILQHLYRWLCSPRSKLHD
PALYRMLCKVMQKVFALLLAEFRKLGATVIFANFSKVILDTGKADLAAARAYCDSLLKAL
QTRDLFEWIEIEPLHFWHSLLFMDQYNYGGIQAKDQDESPASISASSSRCLPGDLQVDIV
SSWNIAEHMPKSTQDHFVVMISEFMYKPWEYALNHAANETFFGDGDLCTPSITAPIAEKF
ESHMTEYLKDQISSYFSDKLFMVVREITHHSKGMKRPQNDDDDLSQVSPQLTGQAHTEGV
ALEFIKHICAVLALDQNVQHDVLVMRRNLLRLIHVREFAPEAEFSPPLPSFVLPNIVCSY
CNDVRDLDLGRDPSLLTQEWRCSMPQCGQPYDREKMENSLLQIVRQRERLYHLQDLVCVK
CQMVKDSHLTEQCKCAGAFKCLEDASEFHRKMQVFYKIAVQQNYQVLRECISWILEIG
NT seq
6657 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgatttccgacgtcgtgatcggaaagatgatcggaaatggaagaagaagcag
cagcaattggttcgaagtgctgaagacgagctcgaatctaagctagggtttgatgtattt
actgaagatgataagcgtcttggttggctacttactttatcatcttcttcacttcaagat
aaagatagcgggaatttgtacagttgcgtagatttgtattttgttactcaggatgggtct
agtttcaaggtgaagtacaaatttcggccttatttttacgcggccacaaaagataaaatg
gagactgatgtagatgcatatcttagaaggcggtatgagaatgacatagccaatattgag
attgtggagaaggaagaccttgatcttaaaaatcacttatctgggttacggaagtcatac
ttaaagatatcatttgacacagtccaacagttaatgaatgtgaggaatgacctgttacgg
gttgttgatagaaatcaaacaaagtttgaagccgctcaagcgtacgagtctatcatcact
ggaaaaggccagcaaaggcctcacgattttgtagattgcataactgaacttcgcgaatat
gatgttccttatcacgtccgattttgcattgacaatgatgtgaggtgtggacaatggtat
gatgtcagtatatcaagcacaggtgttgtgcttgataagaggatagatctgctgcaacgt
gctgaagttcatgtttgtgcatttgatatagagactacaaagcttcctttgaaattccca
gatgctgagtatgatttgataatgatgatctcatacatggttgatggacaaggatatttg
attataaaccgagagtgtgttggggatgatatagaggacttggagtacactccaaaacca
gaatttgaaggatatttcagagtcacaaatgtgaaaaatgaggtggagcttttaagacac
tggttttctcatatgctagatgtaaagcctggtatatatgttacatacaacggggatttc
tttgactggccatttttggaacgcagagcagcccaccatggcttaaaaatgagtgatgag
attggttttcagtgtgacaaggttcagggtgaatgtcgtgctagattttcctgccacctc
gattgctttgcatgggttaagcgagacagttatcttcctcaagggagtcagggcttaaag
gctgtcaccaaagcgaaattaggttatgacccattggaggtgaatcctgaagacatggtt
cgttttgccaaagaaaagcctcagatgatggcatcttattctgtttccgacgccgttgca
acttattacttgtatatgacatatgttcatcctttcatattttccctcgctgctattata
cccatgcctccagacgaggttttgcggaaaggaagtggaactctttgtgagatgctattg
atggtccaggcattcagtgcaaatgttatctgtcctaacaaacaccagtctgaaccagaa
aaattctacaacaataaactcttggagagtgagacttacattggtggtcatgtggagtgc
cttgagagtggtgtttttagatccgatcttccaactagtttcaaagtcgacccatctgcg
tatcagcaactaattgacaacctcgatcgtgatctgcaatatgctattaaagtggagggg
aagatggacttggattcagttgcaaattacgatgaagtgaagggtgcaattaaggaaaag
ctttcttgcttacgagatgaacctgtacgcgaagaatcccccttgatatatcatttggat
gttgctgctatgtacccgaatattattctgacaaacaggcttcagcccccatctatagtt
acagatgaagactgcactgcttgtgatttcaatcgccctggaaaaacttgtctacgaact
cttgaatgggtttggcgcggagaaacttacacggcaaagaaaagtgattataaccatata
aagaggcaaattgaatctgaattggtggatggcaataatgggcaattttctaagtctttc
ctcgacctcccaaaggcagatcaacagtctaagctaaaggaacgtcttaaaaaatactgt
cagaaggcttataagcgagttcttgacaagccttctactgagcttcgagaagctgggatc
tgtatgagagaaaatccattttatgttgacactgtacgcagctttcgagatagaagatat
gagtataaagggctcaataaagtttggaagggaaagctgtctgaagcaaaagctagtgga
aatcctattaagatccaggaagcacaggatatggttattgtgtatgattccttgcagctt
gctcacaagtgtattttaaattccttctatggatatgtcatgcgcaagggtgctagatgg
tattccatggaaatggctggggtagtcacctatacaggggccaaaatcattcagaatgct
cgattgttggttgaaaaaattggtagacctcttgagctagacacagatggaatctggtgt
gcattaccggggtcatttcctgagaacttcacattcaaaacgaaagactcaaagaggaag
ctgacaatctcttatccttgtgttatgctcaatgtagatgtagcgagaaataacacaaat
gatcagtaccagacactaaaggatcctgtcaatagaacatatgcaacacatagtgagtgc
tcaattgagtttgaagtggatggcccttacaaggctatgataattccggcctccaaggaa
gaagggatcctgatcaagaagcggtatgcagtttttaatgacgatggaacccttgcagag
cttaaaggttttgaaatcaagcgcagaggtgagcttaagctcatcaaagttttccaggct
gagatgtttgacaaatttcttgatgggtcaactttagaagagtgttatgcagcagttgcc
gcagttgctgatcgctggcttgatcttcttgataaccaagggaacgatattgcagatagt
gagctgctacattacatttctgaatcaagcacaatgagtaagtctttggcagactatgga
gaacagaaatcctgtgcagtgaccactgccaaacgtcttgctgattttcttggagatacc
atggtcaaagataaagggcttctctgccagtacatagttgcatctgagccaaagggaaca
cctgtaagtgagagagcaattcctgttgcaatatttgaaactgaaacggaactgatgaaa
ttctatgtgcggaagtggtgcaaaacttcatcggatgttggcattaggtccatcattgac
tggtcttattacaagcagcgtctgagttcagccattcagaaaattataaccattccagct
gcaatgcaaaaggttgccaaccctgtacctagggtagttcatcctgattggctacacaag
aaagttcgggaaaaggaagacaaattccgccaaaagaagataaaggatttattctcttct
aagcgggattctatggcaaaaactgatgcagcttccaactatgtagataatggaatagat
aaacataaagttctggatttggaggactttggaaactcaagtggaattggggttggcagt
agacctgttgtgcataattatgaagtaaatggacagcattcattgcagacgacagtctta
gatcaccaaagtgaacatgaatgcacatattctgaggacaacagttcaattgaagtagat
aagagtgaagactatgcaggatggcttgagcagaagaagcgaaagtggaaagagaaccga
gagaaacgaaagagacagaggttatctaatgcaaagaccccaaaacaaggtactggtgtt
tctgagttacatgagagcttgactaatcagaaaagaaacctgggaaaaaccggagttact
tcgtacttcagaaggcaggaattgtctctcactagcagctactggcaggttctgcagctt
gtcccaagtgattgccctggtcaattttttgcttgggtcattgtggaaggcagcatgctt
aaggttccagttactgttcctagagtgttttatctcaactccaaagctccaataactgaa
gaatttcctggaaaacgtgttaacaagattcttcctcatggacaccgcagccacaacctg
attgagataataattgacgagaaagaattcagagaagagagcaagagacttatggctcat
cttgcagatccagaagtcgagggtatatatgaaaccaaagtgccaccagaacttaatgct
gtcctccagattggatgtgtctgcaaagttgatagagcagctaagaaacgaaatcttcaa
gctatctggagcctaaatgaactgcagatgaagaccacagcagagtgtcgatatctggac
aattccctctccttcttttacttgtatcacagttgctgtgaagggcgagcggtgtatggt
ggatatttccctgcagctaacatgatttcctttgttgtggtggatccccaccagaacaga
agtttgaatcccactaatattaagagattttatcatgaagtttgccaagctttatccgtt
gaatcttcaatttctcagggtgtcatgtcatacaaggtggactatgttgttcaaaatgat
gaagctgaaaggatcatgcagaaaataattagtggacacaggccgcacaatcacagacct
tgccttgctattattgagtgtccaaatgttcatcttttgaagtcaggtatacaagtgcta
aatgatcttccatgcgtgagcatccctgccaatgctcgtgatagtcactatccggctctt
ggttggcaaactgtagctgcaaaaattgctctgcagagatgtgcagcatcatctcaatgg
ttaaatgagaggatatctctctcaagatatgcgcatgtacccctggggaatcttgaactt
gactggattatatacactatagatgtcttcttctcaagagcattacgtgatcaccaacag
gtactttggatttctgatgacggacttccagaacttggtagctttagtgaagaggacgca
tgctttgttgatgaggtcaatcaacctgttcttgtttatcctggagcatataggaaggtt
tctgtggagctaaagatccatcacttggctgtgaatgcccttctgaagagcagccaaatt
aatgaaatagagggcagtggcttacatggtttcgagcaagatacagatcctgatacctgt
acatcaagtgagcagtacgactttgacgagtcaactttctgtggacctgccttccgggta
ctgaaacaactagtacaaagatgcctacaagatgcaattacgtcaggaaatgtttatgct
gatgcaatattacaacatctttatcgctggctttgtagcccacgatcgaaacttcacgat
ccagctctatatagaatgctttgcaaggttatgcaaaaggtgtttgcattgcttttggca
gagtttcgcaaattgggtgctacagtcatttttgcaaatttttccaaggttatattagac
actggaaaagctgacttagctgcagcaagggcttattgtgatagtttgctaaaagcacta
cagacaagggacttgtttgagtggattgagattgaaccattgcacttctggcattccttg
cttttcatggatcagtacaattatggaggaatacaggccaaagatcaggatgaatctccg
gccagcatttctgcatcttctagcagatgcttacctggtgatcttcaagtagacattgtg
tccagttggaatattgctgaacacatgcctaaaagtactcaagaccattttgttgtgatg
atctctgagtttatgtataaaccatgggagtatgctctaaatcatgcagcaaatgaaaca
ttttttggggatggtgacttatgtacaccatcgatcacagctccaattgctgagaagttt
gagtcacatatgactgaatatttaaaagatcagatcagctcttatttctcagataaacta
tttatggttgtccgtgagataactcatcactcaaaaggaatgaagaggcctcagaatgat
gatgatgatttgtcgcaagtgagccctcagctaactgggcaggctcatacagagggtgtt
gctttggaatttatcaaacacatttgtgctgttttggctttggaccaaaatgttcagcat
gatgtactggtcatgagaaggaatttgctaagattaatacatgtgagagagtttgctccg
gaagcagaattttctcctcctctaccatcttttgtattaccaaacatcgtttgcagctat
tgcaatgatgtccgagatcttgacctgggaagggatccatcactactcacacaagagtgg
cgatgttcaatgccgcaatgcgggcagccttatgacagagaaaagatggaaaattctctt
cttcaaatagtgaggcagcgggagcgcctttaccacctgcaggacttggtatgtgtcaag
tgtcaaatggtgaaagatagtcacttgactgagcagtgtaaatgtgccggtgcttttaag
tgcctggaagacgcgtcagaatttcatagaaaaatgcaagttttctacaaaatagctgtg
caacaaaattatcaagttctaagagaatgtatctcttggattttagaaattggatga
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integrated database retrieval system
