Chenopodium album (lamb's quarters): 145624420
Help
Entry
145624420 CDS
T11950
Symbol
LOC145624420
Name
(RefSeq) protein STABILIZED1-like isoform X1
KO
K12855
pre-mRNA-processing factor 6
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145624420 (LOC145624420)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
calb03041
]
145624420 (LOC145624420)
Spliceosome [BR:
calb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
145624420 (LOC145624420)
Complex C
U5 SnRNP specific factors
145624420 (LOC145624420)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP6_TPR
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
CFAP70_TPR_C
TPR_16
TPR_17
TPR_8
TPR_2
TPR_CcmH_CycH
TPR_15
ARM_TT21_C
ARM_TT21_N
HAT_Syf1_M
ubiquitin
Y4kD_C
Motif
Other DBs
NCBI-GeneID:
145624420
NCBI-ProteinID:
XP_081533575
LinkDB
All DBs
Position
3:80408844..80414753
Genome browser
AA seq
1033 aa
AA seq
DB search
MVNLITFDRNILVLDMNPKLTTLGNLHDTITDKLGIPSENQFLLSSSKRVIGNVDCVIAD
LGIQSNSTLMLYIPFCGGMQPPVQSKGKLEFLNAKPPPNYVAGLGRGATGFTTRSDIGPA
RAAPDLPDRSATTIGSAAIPTMGRGLGKGAGEEEEEEEGEGKGYDENQKFDEFEGNDVGL
LALAEYDEDDKEADAVWEEIDKRMDSRRKDRREARLKEEIENYNALNPKITEQFADLKRK
LHNLSAEEWDSLPEIGDYSLRNKKRRFESFVPVPDTLLEKARQEQKHVTALDPKSRPAGG
TETPWGQTRVTDLTAVGEGRGTVLSLKLDRLSDSVTGQTVVDPKGYLTDLKSMKITSDAE
ISDIKKARLLLKSIIQTNPKHPPGWIAAARLEEVAGKIQTARQFIKKGCEECPKNEDVWL
EACRLVSPDEAKAVIARGVKAITNSVKLWLQAAKLEQDDISKIRVLTKGLQHIPKSVRLW
KAVVELANEDEAKLFLQKAVKSCPLHVELWLALARLETYERAKKVLNRAREKLPKEPAIW
ITAAKLEEGNGNTAMVEKIIERGIRALQRDGVVVDREAWMREAEASERAGSVVTCLAIIK
HTVGVRVEEEDRKRTWVADAEECKKRGYVETARAIYSHALSVFLTKKSIWLKAAQLEKSH
GTRESLDALLRRAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIRLA
AFKLEFENHEPERAKMLLAKAREKGGTERVWMKSAIVERELGNVSEEKKLLDEGLQRFPS
FFKLWLMLGQIHERSGEQAKAKKVYESGLKNCPHCIPLWLSLANIEEKMIGLSKARAVFT
MARKKNPRSPELWLAAVRAELWHGNKKEGDNLLAKALQECPNSGFLWAAQIENVPHPQRK
SKSSDAITKCDQDPHVIAAVAKLFWHDRKVDKARDQLNRAVTLAPDIGDFWALYYKFELQ
HGNEDIQKEVLKRCVTAEPKHGEKWQAISKAVENAHQPTEAILKKVVIALGKEENTAGNN
KKYNRDKSGMGSI
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggttaatctcataacatttgataggaatatcctagttcttgatatgaaccctaaatta
acaaccttaggcaatcttcatgatactattactgataaattaggaattcctagtgaaaac
caatttttattatcatcatcgaaaagggtaattggtaatgttgattgtgtaattgctgat
ttgggaattcaatcgaattcgactttaatgctgtatatccctttttgtggtggtatgcaa
cctcctgtgcagtcaaaggggaagcttgaattcttgaatgcaaagcccccaccgaattat
gttgccgggttgggtcgtggggctaccgggtttacgacccggtctgatattgggcctgcc
cgagcagccccggacttgcctgaccgttccgctactacgattggtagtgctgcgatccct
actatgggccgtgggctggggaagggtgctggtgaggaggaggaagaggaggaaggagag
ggaaaagggtatgatgagaatcaaaagtttgatgagtttgaagggaatgatgttggattg
ttagcgctggcagagtatgatgaggatgataaggaggcggatgctgtgtgggaggagatt
gataagaggatggactcgaggaggaaggataggagggaggctaggctgaaggaggagatt
gaaaactataatgcattaaatcccaaaattactgagcagtttgcagacttgaaaaggaag
ctgcataatttgtctgcagaggagtgggatagtctcccggagattggagattattctttg
aggaataagaagaggaggtttgagagttttgtgcctgtgcctgatactcttcttgagaag
gctagacaggagcaaaagcatgttacagcccttgatccaaagagtagacctgctggtgga
acggagacgccttggggacagactcgtgttactgatttaactgctgttggtgaggggagg
ggtactgtgttgtcactaaagcttgataggttatctgattctgttacagggcagactgtt
gttgacccgaaaggttatttaactgatcttaaaagtatgaagattacaagtgatgcagaa
atttcagatattaagaaggctaggttgctgttgaaatctattatacaaaccaatccaaag
caccctcctggttggattgcagctgcaaggctagaggaggttgctggcaagatccagact
gctagacagtttatcaagaagggttgtgaggagtgtcccaagaacgaggatgtgtggctt
gaggcatgtcgtttggtgagccctgatgaagccaaggctgtgatagctaggggagttaaa
gcaattactaattctgtgaagttgtggcttcaggctgctaaattggagcaagatgatata
agtaagatcagggtgctgacaaaggggcttcaacatattccaaagtcagtgagactttgg
aaggcagttgttgagcttgctaatgaggatgaggctaagctatttcttcagaaggctgta
aagagctgtcctttgcatgttgaattgtggcttgctcttgctaggctggaaacatatgag
agggcaaagaaagtgcttaacagggccagagaaaagctcccaaaggaaccagctatctgg
attactgctgcaaagttggaagaaggtaatggaaatactgcgatggttgagaagatcata
gagaggggtatcagggccctacaaagagatggagttgttgttgatagagaagcttggatg
agagaagcagaggcctccgagcgtgctgggtctgtagttacttgcctagctattattaag
cacactgtcggtgtcagggtagaggaagaagataggaagagaacatgggtggctgatgct
gaagagtgcaagaagagagggtatgttgaaactgcaagggctatatattctcatgctctg
tctgtctttttgacaaagaagagtatatggcttaaagcagcacaattggagaagagtcat
ggaacaagggaatctcttgatgccttgttgcggagggcagtcacatatgtgccccaggcc
gaagttctctggcttatgggtgcaaaagagaaatggcttgctggtgatgtgcctgctgct
cgagccattcttcaggaagcttatgctgctattccaaattctgaagagattaggcttgct
gcttttaagcttgaatttgaaaaccatgaacctgaaagggcaaaaatgctacttgctaag
gctcgagaaaaaggaggcacggaaagagtttggatgaaatcagctattgttgagagagaa
cttggtaatgtttcggaggagaagaaacttcttgacgaaggtctgcagcggttcccatca
ttcttcaagttgtggttgatgcttggtcagattcatgagcggtctggagagcaagcaaag
gctaaaaaagtttatgaatctggtcttaaaaactgcccacattgcattcctttgtggctt
tcacttgcaaatatagaagagaagatgattgggttgagtaaagctagagctgtttttact
atggctaggaaaaagaatcctcggagtcctgaattgtggcttgctgctgttagagctgaa
ttgtggcatggcaacaaaaaggagggtgataacttgttggctaaggccctccaagaatgt
cctaacagtggtttcttatgggcggctcaaattgagaatgttccccatcctcaacgaaaa
tcgaagagctcagatgcaattacaaaatgtgaccaggatccccatgtcatagctgcagtt
gcaaaactattttggcatgacaggaaggtagacaaggcaagggatcagcttaatagagca
gtgacacttgctccagatattggggatttctgggctttgtactacaaatttgaacttcag
catggaaacgaggacattcagaaggaagtgctgaaacgttgtgtcactgcagagcccaag
catggtgagaaatggcaagcaatttcaaaggcagttgagaatgcccaccagccaactgaa
gcaattttaaagaaagtagttattgcgctagggaaggaagaaaatactgcagggaacaac
aaaaaatataatagagataagtcgggaatgggaagcatataa
DBGET
integrated database retrieval system
