Chenopodium album (lamb's quarters): 145624613
Help
Entry
145624613 CDS
T11950
Symbol
LOC145624613
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
145624613 (LOC145624613)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145624613 (LOC145624613)
Enzymes [BR:
calb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
145624613 (LOC145624613)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
145624613 (LOC145624613)
mRNA degradation factors
3'-5' decay
Ski complex
145624613 (LOC145624613)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
ResIII
DUF1922
AAA_16
Motif
Other DBs
NCBI-GeneID:
145624613
NCBI-ProteinID:
XP_081533800
LinkDB
All DBs
Position
3:complement(83757936..83785613)
Genome browser
AA seq
1351 aa
AA seq
DB search
MDRVTVANDLSFRVGLTGHSAHLSIEPLPPVQSHNPLDDLPQFILPPAFPEETTESIKEY
IEEKYLIPRLDPDEFSPEKAGRDWDFDWFSKAKIPVEPSLPRTAVFPEWELPFRRHKGQE
QGIWEPQSVQVEISELTAGIEDSSALPRITGPAKDFVRGSLHSRPFHPGGLDGSQSLPRV
VPEGSLNGDWIREVLEGGPAEKIPPSFKQGLDSGDLKAYPSSWSVNECHASPKVVSDEKQ
SKLSLQFDDMFKRAWEDDFAENDESDGIESEAESNESEIQVNKTEHEGDVPDVKLSELDQ
ILSVDSAVLDIKADVKNEEGDNQGKESWAIRESNNGIADRFHELVPDLALEFPFELDRFQ
KEAIYYLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFTG
KFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVV
WEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKIIRVTGTTKRPVPLEHCLFYSGE
LYRICENERFLEQGLKAAKDAYKKKNSNAARSGPTMHSGSAAGSGAANAQNRENSHRGKQ
KHSGSRNSGNFNGTGSGNFTSGSQPNLGLRRPDASLWLQLVNKLLKKSLLPVIIFCFSKN
RCDRSADSMMSIDLTSSVEKSEIRVFCDKAFSRLKGSDRNLPQILRVQSLLRRGIGVHHA
GLLPIVKEVIEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEYRQIIPGEY
TQMAGRAGRRGLDKFGTVIIMCRDEILEERDLRHVIVGHPTKLESQFRLTYIMILQLLRV
EELKIEDMLKRSFAEFHTQKKLPEKQQLLMLKLSQPEKTIECIKGEPSIEDYYKMYTEAE
SYLNQITEGVMQSHTAQQFLVPGRVVVVKSQTSQDHLLGVVVKAPSASLKKYIILVLKPE
LPPTMQSPTGSGAVLDIGSNKSGEGFFVLPKGKRALDDEYCSSVTARKGTGVINIKLPYQ
GVAAGVNYEVREVDNKEFLCICNCKIKIDQVRLLEDVSTAAYSKTVQQLSEKKPNGSKYP
PALDPKKDLKLKDMELVEAYHKWDKLLQNMTENKCHGCIKLDEHMKLVKEIFKYRDEVND
LTFQMSDKALQQMPDFHGRINVLKEIGCIDDDLVVQIKGRVACEMNSGEELICTECLFEN
QLENLEPEEAVAVMSAFVFQQKNTSEPSLTPKLSAAVQRLYNTAIRLGQLQASFQLPVDP
EEYARENLKFGLVEVVYEWAKGTEFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIM
GNSALHKKMEAASNAIKRDIVFAASLYITGI
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggatagagtaacagtagctaacgatttatcatttcgggtcgggctcacgggtcacagc
gcccatctttccatcgaacctcttcctccggttcaatcccacaatcctctcgacgacctt
cctcaattcattcttccgcctgcatttcctgaggaaacaacagaatctattaaggaatat
atagaggaaaagtatttaataccaagattggaccccgatgagttctctcctgagaaagct
ggaagagactgggattttgactggttcagcaaggccaaaatacctgtggaaccatcatta
cctcggacagctgtgtttcctgaatgggagcttccatttaggcgccataaaggacaggaa
caaggaatttgggagcctcaatccgtacaggtggagatttcagaattaactgcagggata
gaggactctagtgctttaccacgaattacagggccagcaaaggactttgtgagggggagc
cttcatagtcgcccttttcatccaggtgggttagatggatctcagtctctgcccagggtt
gttcctgagggttcattgaatggtgactggattcgtgaagttcttgagggtggtcctgca
gaaaaaattcctccaagctttaagcaaggattggattctggtgatcttaaggcatatcct
tcttcatggagtgtgaatgagtgccacgcttctccaaaggttgtatcagatgagaagcag
agtaaactgtcactgcaatttgatgatatgttcaagagagcgtgggaagatgattttgct
gaaaatgacgagtctgatggtattgagtcagaagcagaatctaatgaatcagagatacaa
gtcaataaaactgaacatgaaggtgatgttcctgatgttaaattatcggaattagatcaa
attttgtctgtggactctgctgtgttggatataaaggcagatgtgaaaaatgaagaaggt
gacaatcagggtaaagagtcctgggctatccgtgaaagcaacaatggtatcgcagatcgt
tttcatgaacttgttcctgatttggctctcgagtttccgttcgaattagatagattccag
aaggaggctatctactatcttgaacgaggggaatctgtttttgtggcagctcatacatct
gctggaaagacagttgttgctgaatatgcatttgcattggcttcaaagcattgtactaga
gcagtgtacacagctccaatcaagacaatcagcaatcagaaatacagagatttcactgga
aaatttgatgttggccttctcactggcgatatcagcttgaggccagaggcgtcctgcctc
atcatgactactgaaatattgaggtcaatgttgtatagaggtgctgatattatccgtgac
attgaatgggttatatttgatgaagtgcattatgtcaatgatgctgaaagaggtgttgtg
tgggaagaagttataataatgcttcctcgtcacattaatttcgttctcctctctgccaca
gttccaaatacaatagaatttgccgattggatcggcagaacaaagcagaagatcatccgt
gttaccgggaccactaagagaccagttccgttggagcactgcctgttttactcaggagaa
ctctacagaatttgcgagaacgaaagatttttagaacagggcctaaaagctgctaaagat
gcatacaagaaaaagaattccaatgcagccagaagtggccctacaatgcattcaggatct
gcagctggttctggtgcggctaatgcccagaatcgtgaaaattctcatcgtgggaaacaa
aagcattctgggtctcgtaattctgggaacttcaatgggacgggctcagggaactttaca
agtggaagccaacccaacttgggcttgagaagaccagatgcttctttgtggttacaactt
gtgaacaagctcttaaaaaaatcacttttaccggtaatcatattttgcttttcaaagaat
cgttgtgatcgatcagctgatagtatgatgagtatagatcttaccagtagtgtggaaaag
agtgaaattcgtgttttctgtgacaaagcattttcgcggctgaagggttctgaccgaaat
ttacctcagattctccgagttcaaagtctgcttcgtaggggtatcggtgtccatcatgct
gggcttctccctatcgtgaaagaagttattgaaatgctattctgccgtggtgtaattaag
gttctattttcaacggagacatttgctatgggtgtcaatgctcctgccagaacggttgtt
tttgatactttaagaaagtttgatggaaaggaatacaggcagataattccaggggaatat
acacagatggctggtcgtgctggcagaagagggcttgataagtttggaacagttataata
atgtgccgtgatgagattctagaagaacgagatctgagacacgttattgttggacatccc
accaaactcgaatctcaatttcgactaacttatattatgatcttgcaattacttcgtgtt
gaagaattgaagatagaagacatgttaaagaggagctttgctgaatttcatacacaaaag
aagcttcctgaaaagcaacaacttctgatgttaaagctttcacagcccgaaaaaacaata
gaatgcataaaaggtgaaccatctattgaggattattataagatgtatacagaggctgag
agttatttgaaccagataacagagggcgtcatgcagtctcatactgcacagcaattcctt
gtgcctggaagagtggtagttgttaagtctcaaacgtctcaggaccatttacttggtgtg
gtggtaaaagcaccgtcagccagcttgaagaagtacataattttagttttgaaacctgaa
ttacctccaacaatgcaatcccctactggcagtggtgcagtccttgacatagggagtaac
aaatctggagaaggtttctttgtgttgcccaagggaaaacgtgctttggacgatgaatac
tgttcttctgtcactgctcggaagggtactggtgtaatcaacataaaattgccttaccag
ggggtggctgctggtgtgaattatgaggtcagagaagtggacaataaagagttcctttgc
atctgcaattgcaaaataaagattgaccaagttcggcttcttgaagatgttagcactgct
gcctattcaaaaactgttcagcagctttctgaaaagaaacccaatgggagtaaatatcct
ccagcattggatcctaagaaggatctgaagctgaaagatatggaacttgttgaagcttac
cacaaatgggacaagttattgcagaacatgactgagaacaagtgccatggatgtataaag
ttggatgaacatatgaaattagttaaagagattttcaagtacagagatgaagtcaatgat
ttgacgtttcaaatgtctgacaaagcacttcaacagatgcctgactttcacggacggata
aatgttcttaaggaaattggctgtatagatgatgaccttgtagttcagatcaaaggacgt
gttgcttgtgaaatgaactccggagaggagcttatatgcactgagtgtttgtttgagaac
cagttagagaacctagaaccagaagaagcagttgctgtaatgtctgcatttgtttttcag
cagaagaatacttctgagccttctcttactcccaagctatctgctgcagtacagagatta
tataatacagccatcagactgggccagttacaggcaagctttcaactcccagttgaccct
gaggagtatgctcgggaaaatcttaagtttggtcttgttgaagtggtttatgaatgggca
aagggcacagaatttgctgatatttgtgagctgacagatgttcctgaaggcttgatagtg
agaacaattgttcgacttgatgaaacatgtcgagaattcagaaatgctgcagctattatg
ggaaactcagctctacacaagaaaatggaagctgcttcaaatgccatcaagcgtgatatt
gtctttgcagctagcttgtacatcacaggaatctga
DBGET
integrated database retrieval system
