Chenopodium album (lamb's quarters): 145634676
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Entry
145634676 CDS
T11950
Symbol
LOC145634676
Name
(RefSeq) THO complex subunit 3-like
KO
K12880
THO complex subunit 3
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03013
Nucleocytoplasmic transport
calb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145634676 (LOC145634676)
09122 Translation
03013 Nucleocytoplasmic transport
145634676 (LOC145634676)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145634676 (LOC145634676)
03041 Spliceosome [BR:
calb03041
]
145634676 (LOC145634676)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
145634676 (LOC145634676)
Spliceosome [BR:
calb03041
]
Complex C
Other components
EJC/TREX
145634676 (LOC145634676)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
145634676 (LOC145634676)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_EML_2
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
DSE1_N
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EIPR1
eIF2A
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_DCAF12
Tricorn_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
TRM82_WD
PAC11
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
CFAP251_N
Beta-prop_WDR41
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
PROPPIN
DUF7099
Motif
Other DBs
NCBI-GeneID:
145634676
NCBI-ProteinID:
XP_081542204
LinkDB
All DBs
Position
6:complement(17172463..17179303)
Genome browser
AA seq
319 aa
AA seq
DB search
MAQQKAEDATHPFKNLYSREYQGHKKKVHSVAWNCIGTKLASGSVDQTARVWHIEPNSHG
KVKDIEFKGHTDSVDQLCWDPKHADLLATASGDKTVRLWDARSGKCSQQAELSGENINIT
YKPDGAHIAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWDMTGEKFFLTTGNGTVEV
LAYPSLKALDTLTAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDIKEMLCVRTFVKLEWP
VRTISFNHTGEYIASASEDLFIDIASIETGRSIHQIPCRAAMNSVEWNPKSNLLAYAGDD
KNKYQADEGVFRIFGFQSA
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagaaagcggaggatgcaacccacccttttaagaatctctacagtagagaa
tatcagggtcacaaaaagaaggtgcattcagtggcttggaattgtattggaactaagctt
gcttcgggttcggttgatcaaacggctcgagtttggcacattgaacctaatagtcatgga
aaggtaaaggatattgaatttaaggggcacactgatagtgtggaccagctctgttgggat
cccaaacacgcagatctacttgcaactgcatcaggggataaaacagttcgtttgtgggat
gctcgcagtgggaaatgctcacagcaagcagaacttagtggtgaaaatattaacattaca
tacaaacctgatggggcacacatagctgttggaaacagggatgatgaactaacaattcta
gatgttagaaaattcaagccaattcacagacgcaagttcaattatgaggttaatgagatt
gcatgggacatgactggagagaagttctttctgacaactggaaatggtactgttgaagtc
cttgcatacccctctttgaaggcacttgacactcttacggctcacactgctggttgctat
tgtattgcgattgatccactaggaagatattttgctgttggaagtgctgactcattggtc
agtctttgggatattaaagagatgctatgtgttcgaacatttgtaaaactcgagtggcct
gtccgaacaataagttttaatcacactggagagtatattgcttcagccagtgaagattta
ttcattgacatagcaagtattgaaactggacgatctatccatcaaattccttgtcgggcg
gcaatgaatagtgttgaatggaatccaaaatcaaatttgcttgcatatgctggagatgat
aaaaacaaataccaagccgatgaaggtgttttccgcatattcgggttccagagtgcttag
DBGET
integrated database retrieval system