Chenopodium album (lamb's quarters): 145635908
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Entry
145635908 CDS
T11950
Symbol
LOC145635908
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03013
Nucleocytoplasmic transport
calb03015
mRNA surveillance pathway
calb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145635908 (LOC145635908)
09122 Translation
03013 Nucleocytoplasmic transport
145635908 (LOC145635908)
03015 mRNA surveillance pathway
145635908 (LOC145635908)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145635908 (LOC145635908)
03041 Spliceosome [BR:
calb03041
]
145635908 (LOC145635908)
03009 Ribosome biogenesis [BR:
calb03009
]
145635908 (LOC145635908)
03012 Translation factors [BR:
calb03012
]
145635908 (LOC145635908)
Enzymes [BR:
calb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
145635908 (LOC145635908)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
145635908 (LOC145635908)
mRNA cycle factors
Stress granule specific factors
145635908 (LOC145635908)
Spliceosome [BR:
calb03041
]
Complex C
Other components
EJC/TREX
145635908 (LOC145635908)
Ribosome biogenesis [BR:
calb03009
]
Eukaryotic type
90S particles
Helicases
145635908 (LOC145635908)
Translation factors [BR:
calb03012
]
Eukaryotic type
Initiation factors
eIF-4
145635908 (LOC145635908)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
StrH_N
NAT10_TcmA_helicase
CMS1
UvrD-helicase
TniB
Motif
Other DBs
NCBI-GeneID:
145635908
NCBI-ProteinID:
XP_081543409
LinkDB
All DBs
Position
6:15616011..15625352
Genome browser
AA seq
407 aa
AA seq
DB search
MASGSVVPANRGRRNLTDDEKLQFEATEGIEPVTSFERMGIKDDLLRGIYAYGFEKPSAI
QQRAVMPIIQGRDVIAQAQSGTGKTSMISLAVCQMVDTSTREVQALIVSPTRELASQTEK
VIMAIGLHMNIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRNIKLL
ILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITNKFMTDPVKILVKRD
ELTLEGIKQFFVAVEQEDWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTV
SSMHGDMPQKERDAIMKEFRDGDTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKKDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaggttcagtagttccggcaaacagaggaagaagaaacctaaccgacgatgaa
aagctacagttcgaagcaacagaaggtattgaacctgttacaagcttcgaaagaatgggg
attaaagacgaccttttacgtgggatctatgcttatggtttcgagaagccttctgctatt
caacagcgtgctgttatgccgattattcagggtcgtgatgttattgcgcaagctcagtct
ggtactgggaaaacttccatgatttctctcgctgtttgtcagatggttgatacttctaca
cgagaggtccaagcattaattgtgtcgcctactcgtgagctggcttcacaaacagaaaaa
gttataatggccatcggtctccacatgaatatacaagcccatgcatgcattggagggaaa
agtgtgggtgaggatatcaggaaattggagtatggagttcatgttgtttctggaacccca
ggtagagtgtgtgatatgatcaagaggagaacattgagaacccgaaatatcaaactctta
attcttgatgagtctgatgagatgttgagcagaggttttaaagaccaaatttatgatgtc
tatcgttaccttcctccagagcttcaggttgtgttgatctctgccaccctccccaatgaa
attttggagatcaccaacaaatttatgacagatcctgttaaaatccttgtgaaacgtgat
gaattgactttagagggcatcaagcaattcttcgttgcagttgagcaggaagattggaag
tttgataccctttgtgatctttatgataccctcacaattactcaagctgttatcttttgc
aacactaagcgaaaggtggattggctgactgagaagatgcgtaacaataacttcactgtt
tcatcaatgcatggtgatatgccccagaaagagcgagatgctattatgaaagaatttcgt
gatggtgacactcgtgttttgatcacgacagatgtttgggctcgtggaattgatgtccag
caggtttcattggtaatcaactatgatttacctaataatcgtgaactttatattcatcgg
attggtcgctctggccgttttgggcgtaagggtgttgctattaactttgtcaaaaaggat
gatatcaagattctaagagacattgagcaatattacagtacccaaattgacgaaatgccg
atgaatgttgctgatttgatatga
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