Chenopodium album (lamb's quarters): 145638743
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Entry
145638743 CDS
T11950
Symbol
LOC145638743
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
145638743 (LOC145638743)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145638743 (LOC145638743)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
145638743 (LOC145638743)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_14
TPR_16
TPR_12
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_9
TPR_7
ARM_TT21_C
TPR_19
CFAP70_TPR_C
BTAD
DUF6584
TPR_NPHP3
ARM_TT21_4th
NTF2
Motif
Other DBs
NCBI-GeneID:
145638743
NCBI-ProteinID:
XP_081545869
LinkDB
All DBs
Position
7:complement(419916..435559)
Genome browser
AA seq
1171 aa
AA seq
DB search
MNINMNVMEEIQLKTLEELADSHPDDPSHQFNLGKLIWERGEEWREKAAEHFLKAAKLNP
QNGEAFRFLGHYYTCVCFDTQRALKCYQRAVTLNPDDSQSGEALCDLLDKSGKESLEIAV
CREAFGKSPRAFWAFARLGLLMVHQNKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRLG
MYTAAIKSYGRAMELENSKAFAMIETGNIFLMLGSYRKGIEQFQHALEICPQSACAQYGL
ASGLLALSQECIKQGAYSWATSLLEEASEVAKNSAVLTSNMSCVWKLHADIQLTYAKSFP
WTEGGNLKGEEAFSRSLLSWKKTRQIAAVSAKCSYQRALHLAPWQANIYMDVAVALDHVC
SLQGSHETDLSSWKISEKMLLGSLLLESDNHEFWMALGCMSDHRALRQHAFIRGLHLDVS
LASAWAYLGKLYKEEGESQLGRQAFDRARSIDPSLSLPWAGMSADTLIRETASDEAYDSC
LRAVQILPLAEFQIGLAKLALRSNNLLSSEVFGSIRQALQCAPWYPESHNLNGLVSEARH
DYQSAIVSYQLARYAWKTSTLSLSHSHFVDISINLARALCKAENVLEAVQELEDLKERGF
LDVEGLQVYALSLWKLGKNDMSLSAAKDLATCVPTMKLSTAVASISLICCLLYSISGVGS
TINNILQMPRELLQSAKVSFIISAVDAVDRSCQLQSLVSSSRRILSTQEEIMEMHLLIAL
SKLIRNGDGHSLSLQSGIDHLRKALHMYPNGISIRNMLGYLLLSRKQWENDHVVRRCCAV
VPFNSIKQDFRSTHEIIGAEAVACHATYSCKPKYSLSTCKYQNAHGASLIGLMQRWLRLE
PWNHNARYFLVLNLLQTACQAKCPQHLLNVLKRMTSVAVTSQLSLNKTFERYKRFQLLLC
SSELNLLGGDMSSSVSLARDASNLSLSDANTFFAHLQLCRAHAAEDNQTSLNVEFTKCLK
LKTNYPIGWISLKIIESRHRPQNGSTFLDSGFRDSIKEIKESENSWLAVYKLFCGLASQW
AQDFLRAEEFLAEACSLAPTESCFFLCHGAICMELTKMQYGSQYLTMGIRSLKKAQGMSS
IQLPFVSLLLAQAEASLGSKLKWDSNLQLEWYSWSPETRPAELYFQMHLLALGSGTTSSQ
DYGDPLNWVLRAIHLNPSCLRYWRVLRKLAE
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaatattaatatgaatgttatggaggaaattcaattaaaaacccttgaagaactcgcg
gattctcacccagatgacccttcccaccagtttaatcttgggaaattgatttgggaaaga
ggagaagaatggagagaaaaagctgcagagcattttctcaaggcagctaagttgaatccc
caaaatggggaagcattcagatttttaggtcattactatacttgtgtttgtttcgatact
cagagagctctcaaatgctaccagcgtgctgttacgctaaatcccgatgattcgcaatcc
ggggaagcattgtgtgatttactggacaaaagtggaaaagagagcttagagattgctgtg
tgcagggaggcgttcgggaagtcaccccgtgccttttgggcatttgccagactaggtttg
ctgatggtgcatcaaaacaagtggtctgaggcagttcagagtcttcagcatgccatcaga
ggctacccaacctgtgccgatctctgggaagcgttaggtcttgcctatcaacgacttggc
atgtatactgctgccattaagtcttacgggagagcaatggaattggaaaattcaaaagcc
tttgctatgattgagactggaaatatttttctaatgcttggttcgtatcggaagggaatt
gagcaatttcaacatgctctggagatatgccctcaaagtgcatgtgcacagtatgggctg
gcttctgggcttcttgctctatcacaagaatgcattaagcagggtgcatattcatgggca
acatctctattggaggaggcatctgaagttgcaaaaaatagtgctgttttgaccagtaat
atgtcatgtgtatggaagctacatgctgatatacagcttacttatgcaaaatcatttcca
tggacagaaggtggtaatctgaagggcgaggaagccttttctaggtctcttctttcctgg
aaaaaaacacgccaaatagctgctgtgtcagccaaatgttcctaccagcgggctttgcac
ttagctccatggcaagcaaatatatatatggatgttgctgtggctcttgatcatgtttgc
tctttacaggggagtcatgaaactgatttgagctcctggaaaatatctgagaagatgctg
ttaggaagcttgctacttgagagtgacaatcatgaattttggatggcattgggatgcatg
tctgatcatagggcattgagacaacatgcctttatccgagggttgcatttggatgtttct
ctagcttctgcatgggcttatctcggcaagctatacaaagaagaaggtgaaagccaattg
ggaagacaagcctttgacagggctcgaagtatagatccttctctttcattgccatgggct
ggcatgtcagcagatacgcttatcagggaaactgcatcagatgaggcttacgacagttgc
ttacgagccgttcaaatattgcctcttgctgagtttcagattggccttgcaaaacttgct
ctacgttcaaacaacctattatcttcagaggtatttggatctatcaggcaagcgttgcag
tgtgctccttggtatcctgagtctcataatcttaatgggctagtttctgaggcacgacat
gattatcaatctgctatcgtttcttatcagctagcacgttatgcatggaagacttctaca
ctttccttgtcccattctcattttgttgatatatcaattaatctggctagggcactctgc
aaggcagaaaatgtactagaagctgtgcaagaattggaagatctgaaggaaagaggtttt
cttgacgttgaaggccttcaagtatatgctttatcattatggaaacttggcaagaatgat
atgtccctatctgctgctaaagatcttgctacatgtgttcccaccatgaagctgtccact
gcagtggcatctatttctttaatttgctgtcttctgtactccatttccggggtaggatca
actatcaataacattttgcaaatgcctagggagctgcttcagagtgcaaaagtcagtttc
atcatatctgctgtagatgctgttgatcggagctgtcaattacagtctttagtctcaagt
agccgccgtatcctttcaacacaggaagagattatggaaatgcatttgctgattgcgcta
agtaaactaataagaaatggagatggacattctctcagtttacaaagtggcatagaccat
cttagaaaggcattgcatatgtaccccaatggaatttctataagaaatatgctcggatat
cttttgttatcccgcaaacaatgggaaaacgaccatgttgtaaggaggtgctgtgctgtt
gttccgtttaactcaataaagcaagacttcagatctacgcatgaaattattggtgccgaa
gctgttgcttgtcatgctacttacagctgcaaaccgaaatactctctttcaacatgtaaa
taccagaatgcgcacggtgcatcactaatagggttaatgcagagatggcttcgtcttgaa
ccttggaaccataatgctagatactttctagtacttaatttgcttcaaacagcatgccaa
gcaaaatgtccgcaacaccttttgaacgtgctcaagcggatgacttctgtagctgtcacg
agtcagttatctttgaataagacatttgaaagatataaaagatttcagctgcttctgtgt
tcctctgagctcaatttgcttggtggagatatgtcaagcagtgtttctcttgcaagggat
gcatcaaacctttcgctttctgatgccaataccttttttgcccatttacaattatgccgc
gctcatgctgctgaagataaccagacaagtctcaatgtagagtttacaaagtgcttgaag
cttaaaactaattaccctattggttggattagtcttaagattattgaatctcgtcataga
ccccagaatggttccactttcttagattcaggctttagagatagtattaaagagatcaag
gagtcagagaattcatggttggctgtctacaaactgttttgtggtttagcttctcaatgg
gctcaagattttctacgtgcagaggagttccttgctgaagcttgttcactagcacctact
gagagctgcttcttcctgtgccatggtgctatctgcatggagcttacaaaaatgcaatat
ggctctcagtacctgacaatgggtataagaagtcttaaaaaggcacaagggatgtcctcc
attcaattgccatttgtttcccttttgttggctcaagcagaagcaagcctcggatcgaaa
ttgaagtgggatagtaacctccaattggaatggtattcttggtcaccagagacgagacct
gctgaactgtattttcaaatgcatctgcttgcacttgggtctggaaccacatctagtcaa
gattatggagatccgctcaactgggttcttcgagctattcacttgaatccttcttgcttg
aggtattggagagtcctgcgaaagcttgctgagtga
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integrated database retrieval system
