Caloramator sp. Dgby_cultured_2: PWK10_08875
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Entry
PWK10_08875 CDS
T09567
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cald
Caloramator sp. Dgby_cultured_2
Pathway
cald03410
Base excision repair
cald03430
Mismatch repair
cald03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cald00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PWK10_08875 (recJ)
03430 Mismatch repair
PWK10_08875 (recJ)
03440 Homologous recombination
PWK10_08875 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cald03400
]
PWK10_08875 (recJ)
DNA repair and recombination proteins [BR:
cald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PWK10_08875 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PWK10_08875 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PWK10_08875 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
Toprim
LDcluster4
Motif
Other DBs
NCBI-ProteinID:
WDU84359
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All DBs
Position
complement(1290439..1291620)
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AA seq
393 aa
AA seq
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MNPDLRLLYDPFLLKDMDRAIDRIDEAIKKREKIYIYGDYDVDGITSTAVLYRAFKKLGV
DVSFYIPDRVNEGYGINREAIDHISSLDVDLVITVDCGISAIEEVEYAKEKGLDIIITDH
HECKERIPNTIAINPKRHDCQYPFKGLAGCGVAFKLVQALFKFYDLQGYEEFLDLVAIGT
IADIVDITDENRIIVKYGLEKILNSDKAGINAIKQVAGIKDKISTYNVAFQIAPRLNAAG
RLSDAKIAVELFITNDNEKAMQIAKYLDQENKKRQQIEQEILDECIEKIQREIDLKRDRV
IVLSSPNWHVGVIGIVASRIVERFNRPTILFYEEGETLRGSGRSIRGFNLYDNLVECKDL
LVKYGGHELAAGLTIERSKLDDFRKRLNELAQK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcctgatcttaggttgctttatgatccttttcttttaaaggacatggacagggca
atagataggatcgatgaagctattaagaaaagggaaaagatatatatttatggagactat
gatgttgatggcatcacaagcacggcagttctttatagggcctttaaaaaattaggggta
gatgttagtttttatattcccgacagagttaacgaaggatacggtattaatagagaggcg
attgaccatataagctcccttgatgtggatcttgttataacagttgactgtggaataagc
gctattgaagaagttgaatatgcaaaggaaaagggattggatataataattactgaccat
catgaatgtaaagaaaggattccaaatacaatagcaataaatcctaaaaggcatgactgc
caatacccctttaaggggcttgctggatgtggtgtagcctttaaacttgttcaggcttta
tttaaattttatgatcttcagggatacgaggaatttttggatctcgttgctattggaacg
atagctgatattgttgatattacagatgaaaatagaattattgtaaaatacggtcttgaa
aaaatacttaatagcgataaggctggaataaatgcaataaaacaagttgcaggaattaag
gacaagatttcaacctataatgttgccttccaaattgcaccaaggctaaatgctgcagga
agattaagcgatgccaaaattgctgtagagctttttattacaaatgataatgaaaaggca
atgcagattgcaaaatatcttgatcaggaaaataaaaaaaggcagcaaattgaacaggag
attttagacgaatgcatagaaaagattcaaagggagatagaccttaaaagggacagagta
atagttttatcatcacctaactggcatgttggtgtaattggaattgttgcgtcgaggatt
gtggaaagattcaatagaccaactatattgttttatgaagaaggagaaacactaaggggt
tcaggaagaagtataaggggatttaatctttatgataatttagtagaatgtaaggacctt
cttgttaaatatggcgggcatgaacttgcagcaggacttacaattgaaaggtcaaagctt
gatgattttagaaaaaggctcaatgaacttgcccaaaaatag
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