Caloramator sp. E03: FDN13_00450
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Entry
FDN13_00450 CDS
T05994
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cale
Caloramator sp. E03
Pathway
cale03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cale00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDN13_00450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cale03019
]
FDN13_00450
03016 Transfer RNA biogenesis [BR:
cale03016
]
FDN13_00450
Enzymes [BR:
cale01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FDN13_00450
Messenger RNA biogenesis [BR:
cale03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FDN13_00450
Transfer RNA biogenesis [BR:
cale03016
]
Prokaryotic type
tRNA degradation factors
FDN13_00450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
MUG2_C
Motif
Other DBs
NCBI-ProteinID:
QCX32286
UniProt:
A0A5B7TB74
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All DBs
Position
86119..88233
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AA seq
704 aa
AA seq
DB search
MQQIFETTFANRLLKADIGKYALLSNGAVMISYGDTVVLVTANAAPEPKEGIDFFPLSVD
YEERLYAVGKIPGGFIKREGKPTEKAILSARAIDRPLRPLFPKGYRNDVQIICTVLSVDP
DNPPEILAINGASLALCISDIPFNTPVGAVLVGRIDGKFIINPSIEEREKSDLHLTVCAT
KERVMMIEAGADEIPEDIMYDAIMFGFEACQDIIKFQEDVTKEIGKPKVIPELYHVPEEI
EKAVREYCTDKLWEALQYTDREERQNKTDEVKQEVFEHFAEIFPDAEKDVDDVMYRIMKE
HVRTMILRDKRRPDGRGFEDIRPLYCEVGMLPRTHGSGLFQRGQTQVLTAATLGALGDVQ
VLDGLGDEESKRYMHHYNFPPYSTGEVKFLRGPGRREIGHGALAERALEPVIPSEEEFPY
TIRLVSEVLSSNGSTSQASVCASTLSLMDAGVPIKRPVAGIAMGLVTNDDLTKAEVLTDI
QGIEDFFGDMDFKVAGTEKGITAIQVDTKITGLPNEVIKRAIEQARRARMVILNEMLKVI
PEPRKELSKYAPRIITMMIDPDKIRDVIGPGGKTINKIIAETGVKIDIEDDGRLFICAPD
VENGKKAQRIIEGITKEIQVGEIYLGRVNRITSFGAFVEVLPGKEGLVHISKLANERVNK
VEDVVNVGDEILVKVTDIDNQGRINLSRKDAIKKEETENKKESK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaaatttttgagactacttttgccaatagattattaaaggctgatataggcaag
tatgctctactttctaatggagcagtaatgataagctatggcgatacagtagtccttgtt
actgcaaatgcagccccagaaccaaaagaagggattgattttttcccacttagtgttgac
tacgaagaaaggctttatgctgttggtaagataccaggaggttttataaaaagagaagga
aaaccaaccgaaaaagcaatattatcagcaagggctattgatagaccgcttaggccttta
ttcccaaaagggtacagaaatgatgtgcaaataatttgtacagtattatcagtagatcct
gataatcctcctgagattcttgcaataaatggagcatcccttgcattatgtatttctgat
attccttttaatacaccagtaggagctgttttagttggaagaatagatggtaaatttata
attaacccttctattgaggagagggaaaaaagcgatcttcatcttactgtatgtgcaaca
aaggaaagagttatgatgatagaagctggggctgatgagattccagaagatataatgtat
gacgcaataatgtttggatttgaagcttgtcaggatatcattaaatttcaggaagatgtt
acaaaagaaataggaaagcctaaagttataccagagctttatcatgttccagaggaaata
gaaaaggcagttagagaatattgtactgataagctttgggaagcacttcagtatacagat
agagaagaaagacaaaataaaaccgatgaagtaaaacaagaagtatttgaacactttgca
gagattttcccagatgcagaaaaagacgtagatgatgttatgtacagaataatgaaagaa
catgttagaacaatgatattaagggataaaaggagacctgatggaagaggatttgaagat
attagacctctttattgtgaagttggaatgctaccaaggacccacggttcaggtttattc
caaagaggtcaaactcaagtattaacagcagcaactcttggtgcattaggagatgttcag
gtacttgatgggcttggagatgaagagtctaaaagatatatgcatcattataacttccct
ccatactctactggagaagttaaattcttaagaggtcctggaagaagagaaatcgggcat
ggagcacttgcagaaagagctttagagcctgtaataccatcagaagaagagtttccatac
actataagacttgtatcagaggttttaagttctaatggttcaacatctcaagccagcgta
tgtgcaagtactctttctcttatggacgcaggagttccaattaagaggccagttgctgga
atagccatggggcttgtaacaaacgatgatcttacaaaagctgaggttctaactgacata
caaggtatagaagatttctttggagacatggattttaaagttgcaggtactgaaaaaggt
attactgcaatacaagtagatacaaaaataactggtttaccaaatgaggttataaaaagg
gctatagaacaagctagaagagcaagaatggttatattaaatgaaatgctaaaagtaata
ccagaaccaagaaaagaactttcaaaatatgctccaagaataataacaatgatgatagat
cctgataagataagagatgtaattgggcctggaggaaaaacaataaataagataattgct
gaaacaggtgttaagattgacattgaagatgatggaaggttgtttatatgtgcacctgat
gtagaaaatggtaaaaaggctcaaagaataattgaaggcattacaaaagaaatacaagtg
ggagaaatatatcttggtagagttaatagaataacaagttttggtgcctttgttgaagtc
ctcccaggaaaagagggacttgtacatatttcaaaacttgctaatgagagggtaaataaa
gttgaagatgtagtaaacgtaggagacgaaatacttgttaaagtaacagatatagataat
caaggacgtattaatctttcaagaaaagatgcaatcaagaaagaagaaacagaaaacaaa
aaagaaagcaaataa
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