Caloramator sp. E03: FDN13_03215
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Entry
FDN13_03215 CDS
T05994
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cale
Caloramator sp. E03
Pathway
cale03410
Base excision repair
cale03430
Mismatch repair
cale03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cale00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FDN13_03215 (recJ)
03430 Mismatch repair
FDN13_03215 (recJ)
03440 Homologous recombination
FDN13_03215 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cale03400
]
FDN13_03215 (recJ)
DNA repair and recombination proteins [BR:
cale03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FDN13_03215 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FDN13_03215 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FDN13_03215 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
QCX32795
UniProt:
A0A5B7TE12
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All DBs
Position
complement(614443..616209)
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AA seq
588 aa
AA seq
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MEKWMLRNINADITNISKKLGISEVLCRVLLNRGIIDYESAKIFINPDMKYMNNPELMKD
NDNGTDIIIDSINKNEKIAIIGDYDVDGVISIYILYKALKRLGADVIYEIPHRINDGYGI
NINIIDRVIQEGVSTIITCDNGISAIEPIEYAKNRGIKVVITDHHDVPFEDDENGKRKYI
KPCADAIINPKQEDCSYPFKGLCGAGVAYKFIELLYKKRGIDRKEIESFIEFVAIATVCD
VVDLIGENRIIVKKGLEIINNTQNIGLKELIKESGLDGRSITTYHLGFIIGPCINATGRL
DVAKRGVELFLTGDKEEAVKISKELVELNQERKNMTVKGVRDVLEEIESSDLKKDNILVV
YNAQIHESIAGIIAGRVKEIYNKPTIILTDGEDCVKGSGRSIDSYNIFEGLLRCRDILIK
FGGHPLAAGLSIEKSKIDVLREKLNSDSNIAEDDLVRKIYLDMQLPLSEITIELAQELKL
LEPYGKSNEKPLFAEKNVKILRAMKLGEKGNVLKLKLHCGNNKVALDGLYFGEIDKFEDY
IINKFGIKELEKLYKGIQNDIMIDIAFNIDINEYMGFKSVNLIIQNYR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaagtggatgttaagaaatataaatgcagatataactaatatttcaaagaaatta
ggaataagtgaagtcctctgtagggtattgctaaacaggggaataatagattatgagagt
gcaaaaatttttataaatcctgatatgaaatatatgaataatccagaacttatgaaagat
aatgataatggtactgatattataatagatagcattaataagaatgagaaaattgccatt
ataggagattatgatgttgatggggttataagtatctatatactttataaagccttaaaa
agattgggagctgatgttatatatgagataccccatagaataaatgatggatatggaata
aatataaacataatagatagggtaatacaagaaggagtttcaactataataacctgtgat
aatggtatatctgccatagaacctattgagtatgccaaaaatagaggaattaaagttgta
attacagatcatcatgatgtaccttttgaagatgatgaaaatggtaaaagaaaatatata
aagccctgtgcagatgctataattaatccaaaacaagaagattgtagctatccttttaag
gggctttgtggtgcaggagttgcttataaatttattgaattactttataaaaagagaggt
attgacagaaaagaaatagaatcttttattgaatttgttgcaattgcaacggtttgtgat
gttgttgatttaataggagaaaaccggataatagttaaaaaaggtcttgaaataattaat
aacactcaaaacataggacttaaagaattgattaaagaatcaggccttgatggcagaagt
ataactacctaccatttaggatttataataggaccctgcataaatgcaacgggaaggctt
gatgtggcaaaaaggggagtagaactttttttaacaggagataaagaagaagctgtaaaa
atttcaaaggaacttgtagaattaaatcaggaaagaaagaatatgactgttaaaggtgta
agagatgtattagaagaaattgaaagtagtgatttaaagaaagataacatattagtggta
tataatgcacagatacatgaaagcatagcaggtattattgcaggaagggttaaggaaata
tataataaaccaacaataatattgacagatggagaggattgtgttaaaggctccggaagg
agtattgatagctataatatatttgaaggccttttaaggtgcagggatattttaattaaa
tttggaggacacccattagcagcaggactttcaattgaaaaatcaaagattgatgtttta
agagagaaattgaactctgatagtaatattgctgaagatgatttagtaaggaaaatatat
ttagatatgcagcttccattaagtgaaataacaattgaattagcacaagaattaaaactt
cttgaaccttatgggaaaagcaatgaaaagcctttatttgctgaaaaaaacgtaaagata
ttaagagctatgaaattaggggaaaaagggaatgtattaaagctcaagttacattgtgga
aataataaggtagccttagatggtttatactttggagaaatagacaagtttgaagattat
attatcaacaaatttggcataaaagagcttgaaaaactatataaaggtattcaaaatgat
ataatgattgatattgcctttaatatagatattaatgaatatatgggttttaaatcagtt
aatctgattatacaaaattacaggtag
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