Caloramator sp. E03: FDN13_07110
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Entry
FDN13_07110 CDS
T05994
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cale
Caloramator sp. E03
Pathway
cale02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cale00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FDN13_07110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cale03021
]
FDN13_07110
Transcription machinery [BR:
cale03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FDN13_07110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
DUF4833
Sigma70_r4_2
Sigma70_r4
DUF7646
HAD_PNKP
Phage_antitermQ
GerE
DUF1940
Motif
Other DBs
NCBI-ProteinID:
QCX33497
LinkDB
All DBs
Position
complement(1436559..1437407)
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AA seq
282 aa
AA seq
DB search
MSQSCHKVKKGSGTLTNEQMFEMYMKGDKKAREQLILKNINLVRHIANKYYVLFEVDNYK
DFDLEDLIQIGTIGLIKAIEKYDPSMGNKFSTYAVIWIKQTIRRALEGHEETLSLDEKIN
NEGEEDNLTFIDMLKDKSFIIDEELEKKEFKSEVWAALKEKLTEQELEFIKLKFVYGLTE
NSIAERMGMTNKEFRNFKSRLKNNLRTKVRKLKVIYRHWIDENTFYVKAVDYSKPKVQTS
FTTSTVELTVMKRELLREKLREIIKNTPPEKLGEIMRNTPMI
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagagttgtcataaggtaaaaaaaggaagtggtaccttgactaatgaacagatg
tttgaaatgtatatgaaaggtgataaaaaagcaagggagcagctgatattaaaaaacatt
aaccttgttaggcatatagctaataaatattatgtcctgtttgaagtggataattacaag
gactttgacttagaggatttaatacagatagggacgataggacttattaaagcaatagaa
aaatacgatccttcaatgggtaacaaattttcaacctatgcggttatatggataaaacaa
acaataagacgagcattagaagggcatgaggaaactctaagccttgatgaaaagattaac
aatgaaggggaagaagataatttaacctttattgatatgttgaaagataaaagttttatt
atagatgaggaattagagaagaaggaatttaaaagtgaagtatgggcagcattaaaggag
aaactaacagagcaggaattagagtttataaaattaaaatttgtttatggactaacggaa
aactcaattgctgaaagaatgggaatgactaacaaagagtttagaaattttaaaagccgg
ttaaaaaataatttgcggactaaggtaagaaaattaaaagtgatttacaggcattggata
gatgaaaatactttttatgtaaaggcagttgattattctaaaccgaaagtacagacaagc
tttacaacaagtaccgttgaattaaccgtaatgaaaagagagctgctaagggaaaagtta
agagaaataataaaaaatacacctcctgaaaagttaggagagataatgaggaataccccc
atgatttaa
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