Caloramator sp. E03: FDN13_13605
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Entry
FDN13_13605 CDS
T05994
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cale
Caloramator sp. E03
Pathway
cale02020
Two-component system
cale02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cale00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FDN13_13605 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FDN13_13605 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cale03021
]
FDN13_13605 (rpoN)
Transcription machinery [BR:
cale03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FDN13_13605 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
Sigma70_r4
Arg_repressor
HTH_45
HTH_21
HTH_IclR
MarR
HTH_Crp_2
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QCX34654
LinkDB
All DBs
Position
2865775..2867121
Genome browser
AA seq
448 aa
AA seq
DB search
MKLDYNLQLKQEQKLIMTQELQLAVKLLQLNSVELNEYVEEQLVENPLLEREEKEEREEE
KEELVEFINYLEESRDDEISYDEDKEYVSPLNFIIKETSLWDYLREQLMLIPLSKKDKKI
GEYIIDCIDENGYLTIDEKETCEKLGVEIEEVKRIIDLIHTFEPYGVGARDIKECLIIQI
RNKEINDPILENIINNMLEEVGQCNITKIAKENGITYEKAKEYINIIKALDPKPGIRYSA
NDVRYIVPDVILEKIDGKYVVTVNEDSIPHLKINSLYKKLINNKNSPEYHYVKEKLSSAM
WLIKSIEQRIDTIKKVVYAIVEYQMDFFEYGIDLKPLTLKQIADMTSLHESTVSRAVKGK
YIQTPRGLFELKNFFIKGLQTKGGEDVSVSRLKDRIKEIIKNENKEKPYSDQQIADKMNG
EGFNISRRTVAKYREEMNIPSSSKRKTR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgattataatcttcaactgaaacaagaacaaaagctgataatgactcaagaa
ttacaacttgcagttaaactcttgcagttaaattctgtcgagcttaatgagtatgttgaa
gaacagcttgttgagaatccattacttgagagagaagaaaaagaggaaagagaagaagaa
aaggaagaattagtagaatttataaattatttagaggaatcaagggacgatgaaataagc
tatgatgaagataaggaatatgtatcacctttaaattttataataaaagaaacgtctctt
tgggattatttaagagaacagctaatgctgatacctttaagcaaaaaagacaaaaaaata
ggagaatatattatcgattgtatagatgaaaatggatatttaacaattgatgaaaaagaa
acatgtgaaaaattaggtgtagagattgaggaagtaaagaggattattgatttaattcat
acctttgaaccttatggtgttggtgcaagggacataaaagaatgcctaataattcaaata
agaaataaggaaataaatgatcctattttggagaatataataaataatatgcttgaagaa
gttggacagtgcaatattacaaagattgcaaaggaaaatggcataacttatgaaaaagca
aaggaatatataaatattataaaggctttagaccctaagccaggtataagatatagtgca
aatgatgtcaggtatatagtaccggatgttatacttgaaaaaatagatggaaaatatgtt
gttactgtaaatgaagatagtattcctcatcttaaaataaatagtctatataaaaagctt
ataaataataagaattcaccagagtaccattatgttaaagaaaaactatcttctgctatg
tggcttataaaaagcatagagcaaaggattgatacaattaaaaaagttgtatacgcaata
gttgaatatcaaatggacttttttgagtatggaatagacttaaaacctctaactttaaaa
caaatagcagatatgacatccctccatgagtcaactgttagtagggcagttaagggtaaa
tatatacaaactccaaggggattatttgaacttaaaaatttcttcattaaaggattacag
acaaaaggaggggaagatgtttcggtatcaagattaaaagatagaattaaggagataata
aaaaatgaaaataaagaaaaaccctattctgatcaacaaattgctgacaaaatgaacggt
gaaggttttaatatatcaaggagaactgttgcaaaatatagagaggaaatgaatatacct
tcctcttctaagagaaaaactagataa
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