Coraliomargarita algicola: SH580_04565
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Entry
SH580_04565 CDS
T10130
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
calg Coraliomargarita algicola
Pathway
calg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SH580_04565 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
calg03021
]
SH580_04565 (rpoC)
03400 DNA repair and recombination proteins [BR:
calg03400
]
SH580_04565 (rpoC)
Enzymes [BR:
calg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SH580_04565 (rpoC)
Transcription machinery [BR:
calg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SH580_04565 (rpoC)
DNA repair and recombination proteins [BR:
calg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SH580_04565 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
DUF4926
MCM_C
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WPJ96980
UniProt:
A0ABZ0RQD5
LinkDB
All DBs
Position
complement(1183194..1187204)
Genome browser
AA seq
1336 aa
AA seq
DB search
MSNEVARDVLGYEATKSFDRVGITVAAPEAIREWSRGEVKNPETINYRTFKPEPGGLFCQ
RIFGPVRDYECACGKYKRIKYKGVICDRCGVEVTVSRVRRDRMGHIELAVPVSHIWFLKS
MPSRLGLLLDITARNLERVIYYENYLVIDPGKTPLEERQLLTDREYLQAQEEYGEDSFVA
RMGAEAVRDALALVDLESTVTELHEQMHATRSKQIKKKISKRLKTIQGFMESGTRPEWMV
LEVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKNLLSLKTPDVIIHNEKRM
LQEAVDALFDNGRHGRAVTGAGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVSG
PSLKLNQCGLPKKMALVLFEPFIIRRLKELGFVHTVRGARKMIEKQSPEVWDILEEVTAG
HPVLLNRAPTLHRLSIQAFEPVLIEGDAIRVHPLVCTAYNADFDGDQMAVHVPLSLESVL
EAKTLMMATHNIFSPSSGKPILTPSQDIVLGSYFLTLDPPVKPKEGVRLPMVVNADELDT
AVADGALDVHDWINYINPDFEKEGTVFGRADKKIIRTTVGRVIFNTIWPDELGFVNFPVP
KGKLGDIILQTYKTVGRERTVITLDRLKDTGFKIATRAGVSIGIDDMIIPPAKPAIVKAS
RKKIDEVEGQYKKGIITEGERYNKIIDIWTGCTDDIAKAVFEELKSNGGKESVNPVYLMM
DSGARGNKQQVRQLCGTRGLMAKPSGEIIERPILSSFREGLSVLEYFISTHGARKGLADT
ALKTADAGYLTRKLCDVAMDCIIEDFDDGNRDGVWKYAIYEGDDEIVSLYDRIVGRCSSN
DIKNPLNPDEFLVKNGELITEEAARKIEDVGVERVKVLSALTTRKKVGITALEYGINPAY
SAMVERGSSVGIIAAQSIGEPGTQLTMRTFHIGGIASGVLKNPEIKIRTGGKVVYKGLRI
VQTADGANIVLNKTGSVQILDEDDREIETYKIVVGSVLTKGDGDTIEKGEILSMWDPHNI
PILSEKAGRISFTDMIPGVTIKRELDESTGRIATVVIEHKEDLNPAVNIVDDSGKTIATY
AIPTGAQVAVNDDDEIAPGTMLAKTPRQASKTQDITGGLPRVAELFEARRPKDAAEMAKI
DGIVSLDGTVRGKKKLLVTDPETGDEEAHLIPHGKHLVVQVGDLVQKGQNLTEGGADPHE
ILEILGPSAVQDYLISEIQKVYRLQGVEINDKHIEVIISQMLKKVRITDPGDSTSSGASK
WTALRSCLPMTTSKKPVVCLLKVSQCCLVLPRHRLKPNPSSLRHPSRKPHVCSPTPLHWV
RSTCLRASRKTSSWVT
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgaagtagcacgcgacgtcctaggctatgaagccaccaaatcattcgaccgt
gtcggcattacagtcgccgcccccgaggccattcgcgaatggtcccgtggtgaggtgaaa
aatcccgaaacgattaactatcgcacattcaaaccggagccaggcggtcttttctgccaa
cgtatcttcggtcctgtgcgcgactacgagtgcgcctgtggtaaatacaagcgtatcaaa
tacaagggtgtgatctgcgaccgctgcggtgttgaagtgactgtctcccgcgtccgccgt
gaccgcatgggacacatcgaactcgccgttccagtctctcacatctggttcttgaagagc
atgccgagccgtcttggcttactgctcgatatcactgcacgtaatcttgagcgtgtcatc
tactacgagaactatctcgtgatcgatccaggtaagacaccacttgaggagcgtcaactt
ctgacggaccgcgagtatctccaagcccaagaagagtatggcgaagattctttcgtcgcc
cgcatgggggcggaagcagtgcgcgacgcactcgcactagttgaccttgagtctacagtg
acagagttgcacgagcaaatgcacgccactcgctcgaagcaaattaagaagaagatctcc
aagcgtctcaagacgatccaaggcttcatggaatcgggcacacgtccagagtggatggtc
cttgaagtgcttccagtcattccaccggaccttcgcccattggtgccgcttgaaggtggc
cgcttcgcgacctccgatttgaacgacctctatcgtcgtgtcattaaccgtaacaaccgt
ctcaagaacctgttgtctctcaagactccagacgtgatcatccacaatgagaagcgcatg
ctgcaagaagctgtggatgcgctcttcgataatggtcgtcacgggcgcgctgtcacgggt
gctggtaaccgtccactcaagtcactctctgatatgctcaagggcaagcagggccgcttc
cgtcagaatttgctgggtaagcgcgtcgactactccggtcgttccgtgattgtttcgggt
ccatcactgaagctgaatcagtgtggtctgcctaagaaaatggcactcgttctttttgag
ccattcattatccgccgcctcaaagagctcggcttcgtgcacaccgttcgtggcgcacgt
aagatgattgaaaagcagtcgcccgaagtttgggacattcttgaagaagtcactgcaggt
cacccggttctcttgaatcgtgcgcctacattgcaccgcctctccattcaggccttcgag
cctgtgttgattgaaggtgatgcgatccgtgtgcacccactcgtctgcaccgcttacaat
gctgacttcgatggtgaccaaatggcggttcacgtgcctctctcactggaatcagtgttg
gaagccaagaccctcatgatggcgactcacaatatcttctcaccatcttctggtaagccg
attttgactccgtcgcaggacatcgttctgggctcttacttccttaccttggacccaccg
gtcaagcccaaggaaggcgtgcgtctacctatggtcgtcaatgccgacgagttagacaca
gccgttgcagatggtgcgctcgacgttcacgattggatcaactatatcaatcctgacttc
gaaaaagaaggcactgtcttcggacgcgcagataagaagatcatccgcaccactgtgggc
cgtgtgattttcaataccatctggcccgacgagcttggtttcgtaaacttcccagtgccc
aaaggcaaattgggtgatatcattcttcagacctacaagactgttggccgtgagcgcacc
gtcatcacacttgaccgtctcaaggatacaggcttcaaaatcgcgacgcgtgctggtgtt
tccatcggtatcgacgacatgatcattccaccagccaagcctgccatcgtgaaggcttcg
cgtaagaagatcgacgaagttgaaggtcagtataagaagggtatcatcaccgaaggggag
cgttacaacaagatcatcgacatctggactggttgcaccgacgacatcgccaaggcggta
ttcgaagagctcaagtccaatggtggcaaggagtctgtgaatcccgtttacttgatgatg
gattccggtgctcgtggtaataagcaacaggttcgtcagctttgcggaactcgtggtttg
atggccaagccttccggtgaaattatcgaacgtccgattctttcctcattccgtgaaggt
ctttccgttctcgagtatttcatctcgacgcacggtgctcgtaagggtcttgccgatacc
gcgctgaagactgcggatgctggttaccttacccgtaagctctgtgacgtggctatggac
tgcatcatcgaagacttcgacgatggcaaccgtgacggtgtctggaaatatgcgatctac
gaaggtgacgacgaaatcgtatctctctacgaccgtatcgtcggtcgttgctcttccaac
gatatcaagaatccactcaatccagacgagttcctcgttaagaatggtgaattgattaca
gaggaagcagcgcgtaagatcgaagacgtcggtgtggagcgcgtgaaggttctttctgca
ctcaccacacgtaagaaggtcggcatcactgctcttgaatacggtataaatcccgcttac
tcggctatggtcgagcgtggttcatccgttggtatcatcgctgcccagtcgattggtgag
cctggcactcagctgaccatgcgtactttccacatcggtggtattgcgtcgggtgtgctt
aagaatccagagatcaagatccgcacaggtggtaaggtcgtctataagggcctccgtatc
gttcagactgcagatggtgcgaacatcgttcttaataagaccggttccgtgcaaatcctc
gacgaagacgatcgcgaaatcgaaacctacaagatcgtggtgggctccgttctgactaag
ggcgacggcgatactattgagaagggcgaaatcctctccatgtgggatccgcacaacatt
ccaattctctccgagaaggcaggtcgtatcagctttactgatatgatccccggtgtgaca
attaagcgcgagctcgatgagtccactggtcgtatcgccactgtggtgatcgagcacaag
gaagacttgaaccctgcggtcaacatcgtcgacgactccggtaagaccattgctacttat
gcaattcctacgggagcacaggttgctgtgaatgacgacgacgaaatcgctcccggcacc
atgcttgccaagacaccacgtcaagcgtccaagacacaagacattaccggtggtctgcca
cgtgttgctgagctcttcgaagcacgtcgtcctaaggacgcagcggagatggcgaagatc
gatggtattgtttcactcgacggcactgttcgtggcaagaagaagctgcttgttaccgat
ccagagactggtgacgaagaagcacacctcattccgcatggtaagcacctcgtcgttcaa
gtcggtgacttggtccaaaagggccagaacctgactgaaggtggtgcggatccgcacgag
atcctcgaaattctcgggccatccgcggtgcaggactatctcatctccgagattcaaaag
gtctaccgtctgcaaggtgtggaaattaacgacaagcacattgaggtcatcatctcgcaa
atgcttaagaaggtccgtatcaccgatccaggtgactccacttcttctggggcgagcaag
tggaccgctttacgttcatgtctgccaatgaccacatcgaagaagccggtggtatgcctg
ctgaaggtgagccagtgctgcttggtattaccaaggcatcgcttgaaaccgaatccttca
tctctgcggcatccttccaggaaaccacacgtgtgctcaccgacgcctctacattgggta
aggtcgacatgcttaagggcttcaaggaaaacgtcatcatgggtcacttga
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integrated database retrieval system
