Coraliomargarita algicola: SH580_06260
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Entry
SH580_06260 CDS
T10130
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
calg Coraliomargarita algicola
Pathway
calg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH580_06260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calg03019
]
SH580_06260
03400 DNA repair and recombination proteins [BR:
calg03400
]
SH580_06260
Enzymes [BR:
calg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SH580_06260
Messenger RNA biogenesis [BR:
calg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SH580_06260
DNA repair and recombination proteins [BR:
calg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SH580_06260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
MarR_2
Motif
Other DBs
NCBI-ProteinID:
WPJ97309
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All DBs
Position
1647647..1649584
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AA seq
645 aa
AA seq
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MPDKTAPLALLKERFGFDAFRPGQQTVIECLLDGRSAGAIFPTGSGKSLCYQLPSLLLPG
LTLVISPLLALMKDQIDSLRAKGIQAERLDSSLDEADYRRVTDDIRSGTVKLLFVAPERL
SNERFLNLIRGQNISLLAVDEAHCISSWGHNFRPDYLKLADAARALKVERVLALTATATP
QVASDMASAFDIAPADITNTGFYRANLELRVTACNDAERPALLVERLKQRPAGATIVYVS
LQRHAEEVAEHLQQAGFNAAAYHAGMAAEKRVATQEAFMQGRTPIICATIAFGMGIDKSD
IRYIYHYHMAKGYESYMQEIGRAGRDGQPSVCELFACPDDATTLENFVYGDTPDSTSLRG
LLDELLTSGNEIDFALTDLSRRFDMRQLVVSTLLTRLELAGIIRSVGHYYGSIRFAPKVD
SKRLLAQYPSNQAAFLKKVFSCCSKAKKWVTLDMDKAMAHTGQDRGVILRALESMEHKDL
AQLQLAGYRQRFELLADTPDIDALSAEIATSFETHEHMEIERIHRMLDYAQGDRCLTANL
LEYFGEQIQDCGHCSICQGDAPDELPARQTPGMNSCDLTGFDELIKAHPAALGRPRQQAR
FLCGLNSPAVSAVRGLRGKALFARCAEVPFAEVLKNLERSTSNIE
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacaaaaccgccccactcgccctgcttaaagaacgcttcggcttcgacgccttt
cgccccggtcagcagaccgtgattgaatgtctactcgatggccgcagcgccggtgccatc
ttccccaccggctcgggcaagagtctgtgctaccaactgccctcgctactactgccgggg
ctgacactcgtgatctcgcccttattggcgctgatgaaagatcaaatcgacagcctgcgc
gccaaaggcatccaagccgagcgtttggactccagcctggatgaggccgactaccgccgc
gtgaccgacgacatacgcagcggcacagtcaaactactcttcgtcgcacccgagcgcctc
agcaacgaacgcttcctcaacctgattcgcggtcagaatattagcttactcgccgtcgac
gaggcccactgtatctcctcttggggccacaacttccgccccgactacctaaaactggcc
gacgccgcacgcgcactcaaagtcgagcgggtgctggcactcaccgccaccgccacaccg
caagtcgccagcgacatggcgagcgcctttgacattgcgcccgccgacatcaccaacacc
ggattttaccgtgccaacctagagctgcgagtcaccgcctgcaacgacgccgagcgcccc
gcgctgctggtagagcgcctcaagcagcgccctgcgggcgcgaccatcgtatacgtcagc
ctacagcgtcacgccgaagaagtcgccgagcacttgcaacaagccggcttcaacgcggcc
gcctaccacgcaggcatggctgcggaaaaacgcgtcgccacccaagaggccttcatgcaa
ggccgcacacccatcatttgcgccaccatcgccttcggcatgggcatcgacaagtccgac
atccgctatatttaccactatcacatggctaaaggctacgaaagctacatgcaggagatc
ggccgcgccggacgcgatggacagccctcagtctgcgagctcttcgcctgccccgacgac
gccaccactttggaaaacttcgtctatggcgacacgcccgacagcaccagtctgcgcgga
ctactcgacgaattactaactagcggcaacgagatcgacttcgcactcaccgacctctcg
cgccgcttcgacatgcgtcagctagtagtcagcaccttgctcacccgcttggaattggcg
ggcatcattcgctctgtcggacactactatggcagcatacgtttcgcccccaaagtagac
agcaagcggttactcgcccaatacccctccaaccaagccgcctttttgaagaaagtcttc
agctgctgcagcaaagccaagaaatgggtcaccctagacatggacaaggccatggcccac
accggacaggaccgcggcgtcattctgcgggcactggaaagtatggagcacaaagacctc
gcccagctgcaactggccggctaccgacagcgctttgaactccttgcggatacacccgac
atcgatgccctcagcgcggagatagcgaccagctttgaaacccacgagcacatggagatc
gagcgcatccaccgcatgctcgactatgcccaaggggatcgctgcctaaccgcaaaccta
ctcgaatattttggagagcagatccaagactgcgggcactgcagcatctgccaaggcgac
gctcccgacgagctgccagcaaggcagacccccggcatgaacagctgcgatctgacggga
tttgatgaactgataaaagcgcatcccgcagccttgggccgcccacgccagcaagcccga
ttcctctgcggactcaactcgcctgcggtgtccgccgtgcgcggcctgcgcggcaaagca
ctgttcgcgcgctgcgccgaagtgcccttcgccgaggtgctgaagaacctcgaacgctca
acgtccaacatcgaatga
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