Coraliomargarita algicola: SH580_07455
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Entry
SH580_07455 CDS
T10130
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
calg Coraliomargarita algicola
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calg03400
]
SH580_07455
DNA repair and recombination proteins [BR:
calg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
SH580_07455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
Zn_Ribbon_1
AAA_30
DUF7577
AAA_22
AAA
DZR
Cypo_polyhedrin
AAA_16
Zn_ribbon_3
DapB_N
DUF1389
Motif
Other DBs
NCBI-ProteinID:
WPJ97545
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Position
1941626..1943362
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AA seq
578 aa
AA seq
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MYTLRSYQQKAVNSTLQYFRKQRHPAVIVLPTGAGKSLVIAELAKIAKGRVLVLAHVKEL
VEQNHLKYESYGLQAGIYSAGLNQKDHSQKVIFGSIQSVAKAKDTFFSDFTLLVIDECHR
VSMEPESQYAKVIQQLKRNNPRICILGLTATPYRLGHGWIYNYALRGEIKTQELRFFKHC
IYELPLEYMIRNKFLTPPVKVDIPVTSYDFSELTETGQSYTMAQLEEVLQRQRRLTPLII
KNIIDITERDQRQGVMIFSSTVKHAQEIMDHLPAGQARLVVGTTELSERDQIVDDFKRKA
FKYLVNVSVLTTGFDAAHVDVIAILRPTESISLYQQIIGRGLRLETGKKDCLVLDYTGMG
HSIFSPEIGDKKPASESVPVQIPCPECGFVNDFWGIVDEAGNVLEHFGRKCRGGKLNPHS
YEFTPCGYRFRFKICEQCGAQNDITARDCSTCGSVLIDPDVKLKEAKLSKDAHVLTPDSI
EMLERVDKKGTPYLQVKYYDYDANFVAEIHYLSNPNSLKKFSINFLRSHLRKPESKLNIR
SVSEVVQIQSQLRMPAFVIARKQGKFWKITEKIFSEEL
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtatactctcagatcataccaacagaaagcggtcaacagcacccttcaatacttcagg
aagcagcgtcatcctgccgtcatcgtgctgccgaccggggctggcaaaagtttagtcatc
gcagagttagctaaaattgctaaaggcagagtcttagtgctcgcccatgttaaagagctg
gtggagcaaaaccatttgaagtatgaaagctatggcctgcaggcgggcatctattccgcg
ggcttaaatcaaaaggaccactctcaaaaggtcatattcggcagtattcagtctgtagcc
aaagcaaaagatactttttttagcgatttcacactattggtcatcgacgagtgccaccgc
gtaagcatggagccagaaagccaatacgcaaaagtcatccaacagctcaagcgaaacaat
ccccgtatctgtattctggggttaaccgccactccctatcgcttaggacacggctggatc
tataactacgcactccgcggggaaattaaaacgcaagaacttcgcttctttaagcactgt
atctacgagctaccgctggagtatatgatccgaaacaaatttctgacgcccccggtgaaa
gtcgacattcctgtcacttcgtatgacttctccgaactcaccgaaacaggccaaagctat
accatggctcaactcgaagaagtgctacaacgccagagacggctcaccccactgatcata
aagaacatcatcgacattaccgagcgcgaccagcgccaaggcgtcatgattttcagctcc
acagtgaaacacgcacaggagattatggaccacctgcccgcggggcaggccagattggta
gtcggcaccaccgaactcagcgaacgcgatcaaatcgtggatgatttcaaacgaaaagcg
tttaaatacttagtcaatgtatccgtgttaacgactggtttcgatgccgctcatgtcgat
gtgatcgcgattctacgccctacagaatcaatcagcttgtatcaacaaatcatcgggcgc
ggcctgcgattggaaaccggcaaaaaggattgcttggtcttagattacacgggaatggga
catagcatctttagtccagaaattggagacaagaagcccgcatccgagtcagttccggtg
caaatcccctgccccgaatgcggctttgtaaatgatttctggggcatcgtcgacgaagcg
gggaatgtgctggagcactttggacgcaagtgtcgcggaggaaagttgaacccacacagc
tacgaattcaccccttgcggctatcgtttccgctttaaaatttgcgaacaatgcggcgca
caaaatgacatcaccgcccgcgattgtagcacctgtggcagcgtgctaatcgatcctgac
gtaaaactcaaagaagcgaaactctctaaagacgctcacgtgctcacacccgactcgatt
gaaatgttagagcgcgtcgacaaaaaagggactccatatcttcaggtaaaatactacgat
tacgacgccaacttcgttgctgaaatacactacctcagtaatccaaacagtctgaagaaa
tttagtatcaacttcttaagatcgcatctgcgaaagccggaatcgaagcttaacatccgc
tccgtcagcgaagtcgtacaaatacaatcccagttgagaatgccagccttcgtaatcgcc
cgtaaacagggcaaattctggaagattacagaaaagatcttcagcgaagagctctag
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