Coraliomargarita algicola: SH580_09515
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Entry
SH580_09515 CDS
T10130
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
calg Coraliomargarita algicola
Pathway
calg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SH580_09515 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calg03400
]
SH580_09515 (mfd)
Enzymes [BR:
calg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SH580_09515 (mfd)
DNA repair and recombination proteins [BR:
calg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SH580_09515 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WPJ97948
LinkDB
All DBs
Position
2393949..2397416
Genome browser
AA seq
1155 aa
AA seq
DB search
MPSKSTVATPKSTLYHGVCTEARAPLLHSLAQHATTELTLALVADPRRAQELAAEVDRYV
QWSIHKAPVEVLYFPEDPPPDIDAQRRADRICDRLAVLSALLQAPPHKRLLIATPEALLG
NCPAKADFAQGQITLEVGQSHPFRQLIDKLTTELDYDSEALCEQPGQIATRGGLIDLYPY
DAHCPYRIDFFGDEIESIRSFDPTTQRTQDDVSTIRIAAGMPNSDAGAAITEGALIHYLP
TAAVQWIFEDPAALVREHPYRFEKLAIARSDLTPMTPPGTSQDAPSTASLRSFYQVIAQR
KQRDTLTGICELDTDSELFRDAERIEIDSEPTSNYRFHTELAQIGYDRFESEQDARIKFE
NQIADWSRKGFAITLITAGESESKRIQELLKENPKTARLKPHFIQGTLSGGFICHNSPNY
KPPLKSGKNGFALITDTEYFGRRSRKLNRREERARPTISQVDQLLDFTELADGDPLVHLQ
HGVCLFRGLTQLEIQGGSKEVISVEFAEQMTVHVPLQESHLLTRYVGLTKSSPKLAKVGG
ATWDKTRAAAERATLDYAAEMLQLHARRSQAGGFAFPPDHPWQKDFEAAFPFKETPDQLA
AIEATKQDMEKPQAMDRLICGDVGFGKTEVAIRAALKAVLAGKQVAILVPTTVLCQQHFN
TFCERMAQYPIIVDMISRFRSTKQNKESIAHLAAGKVDIVIGTHRLLSHDVHFQDLGLLV
VDEEQRFGVKQKERIKQLRADVDILTLSATPIPRTLYLAMAGARAMSVIETPPVDRRPIE
TIVKSYDEKLIKSAIQAETDRGGQVFYLHNRVDSILGVAAKIEAMHPKLKVAVGHGQMTE
GALEKIMTKFVAGKFDVLVCTTIIESGIDIPNCNTLIIEGADRFGLAQLYQIRGRVGRFK
RQAYAYLLLHRHAAVVEQAQKRLNALKQHNQLGAGFRIAMRDLELRGAGNLLGSQQSGHI
AGIGFELYCQLLKQSVARLKGDPGADRIRAEVKLDFITTGLGGSRARSTSGSFSFAAIKD
AEYGNRKGELIEASLPSEYIAEPRLRIDFYRRLALAEKLEDVLNIAEELADRFGKRPLPT
EALIAVSQVRILAELAGVRRVESEGDRLICKLAMPGKSGEFLKSGSRFPRLKAKDPIKRL
NEIQRWLRKHPKAPA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
gtgccctcgaaatcaacagtagccactccgaaatcgacgctttaccacggcgtttgcacg
gaggcacgtgcgccgctacttcactctctggcgcaacacgcaacaacagagctcaccctc
gcactcgtggccgacccgcgccgcgcccaagaattagccgccgaagtcgatcgctatgtt
caatggtccatccacaaggcccccgtggaagtgctttacttcccggaagatccgcccccc
gacatcgatgcgcaacgacgcgccgaccgcatatgcgatcgcctggcagtgctcagtgca
ctgttgcaagctcccccgcataagcgtctactcatcgccacccccgaagccctactgggc
aactgccccgcgaaagcagacttcgcacaaggccaaatcactctggaagtgggccaaagc
catcccttccgacaattaattgacaagctcacaaccgagctcgattacgactccgaagca
ctttgcgaacaacccggtcaaatcgccacccgtggcggcttgatcgacctctacccctac
gatgcgcactgcccctatcgcatcgacttcttcggcgacgaaatcgaaagcatacgtagt
ttcgaccccactacccaacgcactcaagacgacgtcagcaccattcgcatcgccgccggc
atgccgaactccgatgccggtgcggccatcactgaaggcgcgctcattcactacctgccc
acagcagccgtgcaatggatattcgaagaccccgccgcacttgtgcgcgagcacccctat
cgattcgagaagttagcgattgctcgtagcgacctcacaccaatgacgccgcccggcact
tcacaagacgccccgagcacggcatctctacgctcattttaccaagtaatcgcccaacgc
aagcaacgcgacacgctgactggtatttgtgaattggatacagactccgaactatttcga
gacgccgaacgcatcgaaatagactctgagccgaccagcaattaccgtttccataccgag
ctggcacagatcggctacgaccgttttgagtccgaacaggatgctcgcattaaatttgaa
aaccaaattgcagactggtcgagaaagggcttcgccatcacgttgattactgccggcgag
agcgagagcaaacgcatacaagaactcttaaaggaaaaccctaaaaccgcgcgcctcaag
ccacacttcatacagggcacactttctggtggcttcatttgccacaactctcccaattac
aaaccgcccctcaaaagcggtaagaacggattcgccctgatcaccgacaccgagtatttc
ggacggcgcagccgcaaactgaaccgccgcgaagaacgcgcgcgtcccacaatttctcaa
gtggatcaattgctcgactttaccgagctcgcggatggggatccactggtgcatttgcaa
cacggcgtttgcctctttcgcggactcacacagctagaaatacaaggtggctccaaagag
gtgatctccgtcgagtttgcggagcaaatgacggtgcatgtgccgctgcaagaatcgcac
ctactcacccgctacgtcggcctcaccaagtccagccccaagctcgcaaaagtgggcggc
gcgacttgggataagacccgtgccgcggccgagcgcgccacactcgattacgcagcagaa
atgctgcaacttcacgcccgtcgcagtcaagcgggcggctttgcatttccacccgaccac
ccttggcaaaaagactttgaagccgcctttccatttaaagaaacgcccgaccagctcgca
gcgatcgaagccaccaaacaagacatggaaaagccacaagccatggatcgcctgatttgt
ggcgacgtgggcttcggcaaaacagaggtcgccattcgcgcggctctcaaagcggtgctc
gcgggcaaacaagtcgccatcctagtgcccaccactgtgctctgccaacagcactttaac
accttttgcgagcgcatggctcaatacccgatcattgtcgacatgatcagccggtttcgt
agcacgaaacaaaataaagaaagcatcgcacacctcgcagccggtaaggttgacatcgtc
atcggcacccatcgtttgctcagtcacgacgttcatttccaagatttgggactactcgtc
gtcgacgaagagcaacgcttcggtgtaaagcaaaaagagcgaatcaaacagctacgcgcc
gatgtcgacatcctcaccctgagtgccactcccatcccacgcacgctctacctcgccatg
gcgggcgcacgtgccatgagtgtcattgaaacaccacccgtcgaccgccgccccatcgaa
accattgtaaaaagctacgatgaaaagctaatcaaatccgcgatccaagccgagaccgat
cgcggaggacaagtattttacctacacaaccgagtcgacagcattctaggcgtcgccgct
aagatcgaagccatgcaccccaagctcaaagtcgccgtcggccacggacagatgactgag
ggcgcgctggaaaaaatcatgacgaaattcgtagcgggaaagttcgacgtgttagtctgc
acgaccatcatcgaatccggcatcgatatccccaattgtaatacattgatcatcgaaggt
gctgaccgtttcggactcgcgcagctgtatcaaatccgcgggcgcgtgggccgcttcaaa
cggcaagcctacgcctacttattattgcaccgtcacgccgcggtggtggaacaagcgcaa
aagcgcttaaacgcgctcaaacaacacaaccagttaggggccggttttcgcatcgccatg
cgcgacttggaattacgcggcgccggcaacctgctcggctcacagcagagcggacacatc
gccggcatcggctttgaactgtattgccaactactcaaacagagcgtggctcgtctcaaa
ggcgatccgggagccgaccgcatacgagcggaagtaaaactcgacttcatcaccaccggc
ttgggcggcagccgtgcccgcagcaccagcggctcctttagctttgccgcgattaaggac
gctgagtatggcaaccgcaaaggcgagctaattgaagcgtccttgcccagcgaatacatc
gccgagccccgcttgcgcatcgacttctaccgccgcctggccttagctgaaaagctagaa
gacgtgctcaacatcgccgaagagttggccgaccgctttggcaagcgtcccctgcccacc
gaagcactgatcgccgtcagccaagtgcgcatcctcgctgagctcgccggtgtgcgccgc
gtcgagagcgaaggcgatcgcctgatctgcaagctcgccatgccggggaaatcgggcgaa
ttcctaaagtccggcagccgtttcccgcggctcaaagccaaagaccccatcaagcgactc
aacgaaatccaacgctggttacgtaagcaccccaaggcaccagcttag
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