Coraliomargarita algicola: SH580_13475
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Entry
SH580_13475 CDS
T10130
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
calg Coraliomargarita algicola
Pathway
calg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH580_13475 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calg03019
]
SH580_13475 (rnr)
03016 Transfer RNA biogenesis [BR:
calg03016
]
SH580_13475 (rnr)
Enzymes [BR:
calg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SH580_13475 (rnr)
Messenger RNA biogenesis [BR:
calg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SH580_13475 (rnr)
Transfer RNA biogenesis [BR:
calg03016
]
Prokaryotic type
tRNA degradation factors
SH580_13475 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WPJ94444
UniProt:
A0ABZ0RNB5
LinkDB
All DBs
Position
complement(3317838..3320381)
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AA seq
847 aa
AA seq
DB search
MELRQKLLKLFGAKDYVPMRRMEIVSVLKLDAEDTKQAHTLLDQMLERGEIARLKKDRLC
IPEDADLVSGRIIVRQSGSAILIPDAAPAGDGYPISAEDTGVAMHGDTVLARKVQPSRRP
FHGRGRKQRPVYDPDAKPNVRVIRILKRAHSSIPGTLAQGRHATYVIPDDPRITQDILVP
DPQNSGIRPIPQKGDKVVVKLLEWKQRHLNPEGEIIEVLGRTHEPDAEFKAILYKYDLSP
QFPAAVEKQTESIPDKVRPEDIGNRQDCRDLFTFTIDPDDAKDFDDALSLEFLENDKFRV
GVHIADVSNYVKPGSPLDREAQERGNSTYLVGTVISMLPHALSNGLCSLVEAEDRLTKTC
FITFNSNADVIDVQFANTVICSNKRLTYKQAYAFMTQDDFATIRQTPLPPKHQTGSTGRS
LDEVSDEEMGTLKKHIHQLWQLASQLRTRRFAKGSLDLDMTDVKIYVDEDGYADRIEKQF
NDESHQLIEEFMLTANEQVARTMKKQNFPCIYRVHDEPEEEKLKELRETMMAFGVKCGNL
QKPREMTALLKKLKEHPQGYTLKVHILRSLKQAQYRASADGHYGLAKHDYTHFTSPIRRY
ADLIVHRVLDGYLCKIGADSALSKPDIRYPQAKLESLGDHISITERNSIDAERESVKTKL
LEFYDRELQKKEKQHFKAIITDVKNHGLFVELTDTLAFGMIHISTLDDDFYHPNAEGTAL
VGRRKQKAYSLGQYIVVQVERVDRFKRQIDFRVVVSDERDIGKKPGKPFKGRRISSERSA
HKTPAKTADSRATIRKPKTSRGSATRRKASADSSNPANTNSKQPSTGGKVLTTRPKKNGR
NRKRASK
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggaactacgccaaaaactactgaagctcttcggagccaaagactatgtccctatgcgc
cgcatggagatcgtctcggtgctgaagctcgatgctgaagacacaaagcaagcccacaca
ttactcgaccaaatgctggagcgcggggaaatcgcccgcctgaaaaaagatcgcctgtgc
atcccagaagacgccgacctggtcagtggccgtattatcgtccgacaaagcggctctgcc
atcctcattcccgatgcagcacccgccggcgacggctatccgatcagtgcagaagacaca
ggtgtcgccatgcacggcgacaccgtactcgcccgcaaggttcaaccttccaggcgcccc
tttcatggcagaggccgcaaacaacgccccgtctacgatccagatgccaagccgaacgtg
cgtgtcatacgcattctcaaacgtgcccacagttccattcccggcaccttggcgcaaggc
cgccacgcgacctatgtcatccctgacgacccgcgcatcacacaggatatactcgtgccc
gatccgcaaaactctggcatccgccccatcccccagaagggcgataaagtcgtcgtcaaa
ttactggaatggaaacaacgccacctcaaccccgaaggtgaaatcatcgaagtgctcggt
cgcacccacgagccggatgccgaatttaaagcaatcctttataaatacgacctcagccca
caattccccgcagcggtggagaaacagactgagagcattcccgataaagtgcgccccgaa
gacatcggtaaccgtcaagattgccgcgatctcttcaccttcaccatcgaccccgacgat
gccaaagactttgacgacgccctttcgctagaatttctggaaaatgataaattccgcgtc
ggcgtgcacatcgccgacgtgagcaattacgtcaaaccaggctctccactcgaccgcgag
gcacaagaacggggcaacagcacctacctcgtaggcaccgtgatctccatgctgccacat
gcactctccaatggcctctgctcactggtcgaagccgaagaccgcctgaccaagacctgc
tttatcaccttcaacagcaatgccgacgtcatcgacgttcaatttgccaacaccgtaatt
tgcagcaacaaacggctcacctataagcaggcctatgcgtttatgacgcaagacgacttt
gccacgattcgtcagacaccactcccgcccaagcaccagaccggctccaccggacgctcg
ctcgacgaagtcagcgacgaagaaatgggcaccctcaaaaaacacatccaccaactctgg
cagctcgcctcacaactacgtacgcgccgctttgccaaaggctcactcgatctcgacatg
acagatgtcaaaatctatgtcgacgaagacggctacgcggaccgcatcgaaaagcagttc
aacgacgagagccaccaactcatcgaagagttcatgctcaccgccaatgagcaagtggcg
cgcacgatgaagaagcaaaacttcccctgcatctaccgggtgcacgacgaaccggaggaa
gaaaagcttaaagaactacgcgagaccatgatggcctttggcgtcaaatgcgggaaccta
cagaaaccacgtgagatgacggcactgctcaaaaagctcaaagaacacccccaaggctat
acgctcaaagtacatatcctacgcagcctcaaacaagcacaataccgcgcctccgccgat
gggcactacggactcgccaagcacgactacacccatttcacctcgccgattcgccgctac
gccgacctgatcgtgcaccgcgtgctcgacggctatctctgcaaaatcggggccgactcc
gcactctccaagcccgacatccgctacccacaagcaaaactggaaagcctcggagaccat
ataagcatcaccgagcgcaactccatcgatgccgagcgtgaatccgtaaagaccaaactg
cttgaattctacgaccgtgaattacaaaagaaggaaaaacagcatttcaaagccatcatt
accgacgtaaaaaaccacggcctttttgtcgaactcaccgatacacttgcctttggcatg
atacatatctcgaccttggacgacgatttctaccaccccaatgccgagggcaccgcattg
gtggggcgtcgcaaacaaaaagcgtattcactcggccaatacatcgtcgttcaagtcgag
cgcgtggatcgcttcaaacgacagattgacttccgagtcgtcgtctccgacgagcgcgac
atcggcaagaagcctggcaagcccttcaagggccgccgcataagcagcgaacgcagcgct
cacaaaaccccagccaaaaccgcagacagcagagccacgatacgcaaacccaaaacttcg
cgcggctcagccacacgacgcaaggcctccgcggatagctccaatccagccaacacaaac
tcgaaacagccaagcacaggcggcaaagtcttaacgacacgccccaaaaagaacggccgc
aatcgcaaacgtgcatcaaaataa
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