Coraliomargarita algicola: SH580_14305
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Entry
SH580_14305 CDS
T10130
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
calg Coraliomargarita algicola
Pathway
calg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH580_14305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calg03019
]
SH580_14305
03400 DNA repair and recombination proteins [BR:
calg03400
]
SH580_14305
Enzymes [BR:
calg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SH580_14305
Messenger RNA biogenesis [BR:
calg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SH580_14305
DNA repair and recombination proteins [BR:
calg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SH580_14305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DUF5817
Motif
Other DBs
NCBI-ProteinID:
WPJ94604
LinkDB
All DBs
Position
complement(3489501..3491597)
Genome browser
AA seq
698 aa
AA seq
DB search
MACPPFGSRSKRLSKLYLEKKDTLVVMPTGGGKSLCFQLPALLLPGVTLVVSPLIALMKD
QVDALQARGLPAGLLNSSQTLEEQRATLDAIRQRTLKLVYVAPERFRSQSFLNALPKDAI
SLFAIDEAHCLSQWGHDFRPDYMRLGEARKALGSPPCIALTATATPDVQGDIMQVLEMRE
PAEFVAGFARENLSFKVRKIGSNADKQEALLRLIKQHKTGIIYCATRKSVDKVAAAIEPL
AGSVIRYHGGLSDKERTQAQEIFMQRKSNVVVATNAFGMGIDRADIRFVCHYEMPGSVEA
YYQEGGRAGRDGAPSVCEMLFSYADKRVQDFFIEGANPGKELIARVFDMLCAESDENHEV
RLPVDDLCERLNTGRKVNPMAVSTAISTLSRHKWIERFEVPGRRLKGTRILKLGQSGRDL
PLDGQALAIKAQRDEARLKAVIDFAYASGCRQQWILNYFGERNSQPCGRCDGCRQRKQLA
NREVKADEWTLVKMALSGVARMSSRRAPDEWTPRFGKRKIIQCLLGSQSAPILDAGLDAL
STYGILKREGSAFVDALFESFEQAGLVQVVTEEGFPLLKLTELGSQVMRGVAQPALALPE
RTAGSAGKVTTAKKLKKGQAPEGILDNALYQKLAAKRSEMAAANGKPAYTVFPNFVLVEL
ANLKPSSEREAIKIRGIGPAKLKTVLPPFLEVIKAHNA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
ttggcatgccctcctttcggcagccgcagcaagcgattatcgaagctgtacctagagaaa
aaagatactttagtggtgatgccgacggggggcggtaaaagcctctgctttcaattgccc
gcgctactgctaccgggggtgacactggtggtctcaccgctgattgcattgatgaaggat
caagtggacgcgctgcaagcacgcggcctgcctgcggggctgctcaacagctcgcagacg
ctggaagagcagcgggccacattggacgctatccgccaacgcacgctcaagctggtctac
gtcgctccggagcgttttcgctcgcaaagtttcctcaatgcgctgccgaaagacgccatc
agcttgttcgccattgacgaagcgcactgcctctcccagtgggggcacgatttccggccc
gattacatgcgactgggtgaagcgcgcaaagcgctgggctccccaccctgcatcgcgcta
accgccacggccactccggatgtgcagggcgacatcatgcaggtgctggaaatgcgtgaa
cctgcggaattcgtggcaggctttgcccgtgagaacctaagttttaaggtgcgcaaaatc
ggctccaacgccgataagcaggaggctctactgcgcctgatcaaacagcataagactggc
atcatctattgcgccacacgtaagtcggtcgataaagtggctgccgccattgagccattg
gcaggctccgtcattcgctaccacggcgggctgtccgacaaggagcgcacgcaagcgcag
gaaattttcatgcagcgcaagtcgaacgtagtcgtcgccaccaatgccttcggcatggga
atcgaccgtgccgatatccgcttcgtgtgccactatgaaatgccggggagtgtggaagct
tactatcaggaaggcgggcgcgcagggcgcgacggcgccccttcggtctgcgaaatgctc
ttctcctacgcggacaagcgggtgcaggactttttcatcgaaggtgccaaccctggcaaa
gaactgatcgcccgggtatttgacatgctatgcgccgaaagtgacgaaaaccacgaagtg
cggctgcctgtcgatgacctctgtgagcgtctaaatacaggccgcaaggtcaacccgatg
gctgtcagcaccgccatatccacactctcacgccataaatggatcgaacgtttcgaggtg
ccggggcgacgactcaaaggcacccgcattctcaaacttggccaaagcggtcgcgaccta
ccactggacggacaagctctggccatcaaagctcaacgcgacgaagcccgcttaaaggca
gtcattgacttcgcttacgcctccggctgccgccagcagtggattctcaactactttggc
gaacgcaacagccagccctgcggtcgctgcgacggttgccggcaacgcaagcaactggcc
aatcgcgaggttaaggccgatgagtggaccttggtgaagatggcgctcagtggcgttgct
cgcatgagcagccgtcgcgctcccgacgaatggaccccgcgcttcgggaagcgtaaaatc
attcaatgcctactcggcagccaatcggcccccatcctcgatgcggggctggacgcactc
tccacctatggcatactcaagcgcgaaggcagcgcttttgtggatgcactcttcgaaagt
ttcgagcaagcgggactggtacaagtcgtgaccgaagaaggcttccccctcttaaagctc
accgaactcggctcgcaagtcatgcgcggcgtcgctcaaccggccctggcactgcccgag
cgcaccgctgggagcgccggcaaagtcaccacggccaaaaagctaaaaaaaggacaggcg
cccgaaggcattttagacaacgcactctatcaaaagctggctgcgaagcgcagcgagatg
gccgctgccaacggcaagcctgcctataccgtattccccaactttgtgttggtcgagctg
gccaacctcaaaccaagcagcgagcgcgaagcgatcaagatccgcggcatcggccccgct
aaactgaaaacggtgctaccccccttcctagaggtgatcaaagctcataacgcgtga
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