Coraliomargarita algicola: SH580_15205
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Entry
SH580_15205 CDS
T10130
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
calg Coraliomargarita algicola
Pathway
calg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH580_15205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calg03019
]
SH580_15205
Enzymes [BR:
calg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SH580_15205
Messenger RNA biogenesis [BR:
calg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SH580_15205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
Utp25_C
Cas3-like_C_2
Bac_DnaA
Motif
Other DBs
NCBI-ProteinID:
WPJ94780
UniProt:
A0ABZ0RIE7
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All DBs
Position
3683258..3684472
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AA seq
404 aa
AA seq
DB search
MTFHELGLDESILKSIDEFGFTEPTPIQAGAIPHILEGRDVIGSAQTGTGKTAAYALPIL
HRLGGHREGAAPRCLILGPTRELAAQVEDQFDSYGKYCAPKCCLIHGGVGYGKQIDEIKA
GADVVIATPGRLLDHIQQKNFDLKSIEVLVLDEVDRMLDMGFIDDVQRIMKLCNKNRQTL
LFSATVSEDIKRLVAKGLKDPVDVTIGIKLTPAETVKHVIYPVGAMQKFDLLIALIDQME
IDSMIIFCRMKVGADRITRWLQERGLSCAAMHSNLPQKARTKALQQFKDGKIKILIATDI
ASRGLDIANVTHVINYDVPEHAEDYVHRIGRTGRAQREGDAATIVAPDEQAKLDAIEKFI
DMQIPQLKLEGFNYFHEPIIRTSTAEKPRRRKRNSGSSRFGRRR
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttcacgaacttggactcgacgagtctatccttaaatctatcgacgaattcggc
tttacagagccgacacctattcaagcgggcgcgatcccacatattctcgaagggcgcgat
gtaatcggctccgcgcagacaggcacaggtaaaacggccgcctatgcgctgccgattctg
catcgcctcggcgggcaccgcgaaggcgccgcaccgcgttgcttgattttgggccccaca
cgtgagctggcggcacaggtggaggaccagtttgattcgtatggcaaatactgtgcgcct
aagtgctgcctgatccacggtggtgtgggctatggtaagcaaattgatgagatcaaggcg
ggcgccgatgtcgtgatcgcgacgcccgggcgtttgctggaccacattcagcaaaagaac
tttgacctcaagtccatcgaagtcttggtgctggatgaggttgatcgtatgctcgatatg
ggctttatcgacgatgtgcagcgcatcatgaagctgtgcaataagaaccggcaaacatta
ctcttttcggcaactgtatcggaggatattaagcgcttagtcgctaagggcttaaaagat
cccgttgacgtgaccattggtattaagctcacacctgcagagacggtgaagcatgtcatt
tatccggtgggagccatgcagaaatttgacctgctgatcgcactgatcgatcaaatggaa
atcgatagcatgatcattttctgtcgtatgaaggtgggcgccgaccgcatcacacgctgg
ttgcaagagcgtggcttgagttgcgcggcgatgcactcgaatctgccgcaaaaggcgcgc
actaaagcactacagcagtttaaggacggcaagattaagattttgattgcgacggatatt
gcgtcgcgcggtctggatatcgccaacgttacccacgttattaattacgatgtgccggag
catgccgaagattatgtgcaccgcatcggccgcaccggccgtgcgcagcgtgaaggcgat
gcagcgacgatcgttgcgcctgatgagcaagccaagttggacgcaatcgagaagtttatt
gatatgcagattccgcagttgaagttggaaggctttaactactttcatgagccaatcatc
cgcacttcaacggctgaaaagccacgtcgccgcaagcgtaattcaggcagcagccgtttt
ggtcgtcgtcggtag
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