Coraliomargarita algicola: SH580_16600
Help
Entry
SH580_16600 CDS
T10130
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
calg Coraliomargarita algicola
Pathway
calg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH580_16600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calg03019
]
SH580_16600
Enzymes [BR:
calg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SH580_16600
Messenger RNA biogenesis [BR:
calg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SH580_16600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WPJ95049
UniProt:
A0ABZ0RII2
LinkDB
All DBs
Position
complement(4018799..4020229)
Genome browser
AA seq
476 aa
AA seq
DB search
MSEITFQDLALADPIQRALKAKGYTTPSPIQAKAIPVLLEGHDLLACAQTGTGKTAAFAL
PVLDGFARNPRKPFRRGVRCLILTPTRELAVQVTESFKTYGEGLGLKIGMVFGGVSEKPQ
IKALYGGLDVLVATVGRLLDLKQQGHVDISQVDTFILDEADRMLDMGFIRDIRKIAAAIP
QQRHTLLFSATMAPEITELANSLLNNPQEIRIAPQGTTAEKIDQHVLFVKKTDKQALLLD
LIQEHQHKSANNELSLIFSRTKHGAKNLAKKLCSVGIEADSLHGNKSQNARQKTLDMYKK
GEVRVLVATDVAARGIDVKNITLVINFDLPMESDAYVHRIGRTARAGTSGKALSFCSEDE
VALLRQVEKLIKRRVPIYQHEYHAAQIEHHHTSGAPAQKPKQGGGGGGRGGNRGPRSGGG
GKRGPRSGGGSGGAQRSARPQGGTGGNPKPQSDSRPTGGFQKGAGQRSNRSRGRNR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaattacatttcaggatcttgctttggcagatccgattcaacgcgcccttaaa
gctaaaggctacaccacaccttccccgatccaagccaaagccatcccggtgttgctcgaa
ggccacgacttgctcgcttgcgcacagacaggcactggcaaaacagccgcctttgcactg
cccgtgctcgacggctttgctcgtaatccgcgcaaacctttccgccgtggcgtgcgctgc
ctaatcctgacacccacccgggaattggcggtacaagtcaccgaaagcttcaaaacctat
ggcgaaggcctcggactcaaaatcggcatggtctttggcggcgtgtccgaaaaacctcaa
attaaagcactctacggagggctcgatgtactagtggccacggtcggacgcctactggac
ctcaagcaacagggccacgtcgacatctcacaagtcgataccttcatcctcgatgaagcc
gaccgcatgcttgatatggggttcattcgcgacattcgcaaaatcgcagccgccatccca
cagcaacgccacaccctgctcttctcggcgacgatggccccggagatcactgaactggct
aacagcctcttgaataatccgcaggaaatccgtatcgccccccaaggcaccacggccgag
aagatcgaccaacatgtgctctttgtcaaaaagaccgacaagcaagcgctactgctcgac
ttaattcaagaacatcagcataagtcagccaacaacgagctgagcctcattttcagccgc
accaaacacggcgccaaaaatctagccaaaaaactctgcagcgtcgggattgaggctgac
tccttacacggcaataaatctcaaaacgcccgacaaaagaccctcgacatgtataagaag
ggcgaagttcgtgtgcttgtcgccaccgatgtcgccgcgcgcggaatcgacgtgaagaac
atcacgctcgtaatcaacttcgacctgcccatggagtccgacgcctacgtgcaccgcata
ggtcgtaccgcccgcgcaggcaccagcggcaaagccctctccttttgttccgaggacgaa
gtcgcactcttgcgtcaagtcgagaaactgattaagcgcagagtccccatttatcaacac
gagtatcacgctgcacagattgaacaccaccataccagcggcgctcctgcacaaaagccc
aaacaaggcggaggcggcgggggccgtggaggcaatcgcgggccacgcagcggaggcggc
ggtaagcgcggcccacgcagcggcggtggtagcggaggcgcacaacgcagcgcacgtcca
cagggcggaacaggcggcaatcccaagccccaaagcgacagccgccccacaggcggtttt
caaaaaggcgcgggacaacgcagtaatcgcagccgcggccgaaatcgataa
DBGET
integrated database retrieval system
