Coraliomargarita algicola: SH580_18595
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Entry
SH580_18595 CDS
T10130
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
calg Coraliomargarita algicola
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calg03019
]
SH580_18595
Messenger RNA biogenesis [BR:
calg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SH580_18595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
HD_3
Motif
Other DBs
NCBI-ProteinID:
WPJ95432
LinkDB
All DBs
Position
complement(4510267..4511250)
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AA seq
327 aa
AA seq
DB search
MSEFKTVQELKQLDPAIAVPFRSIFILRRKTVKTAKNGNPFLSIELGDAGGSFTANAFGD
SAVFAALENVAEGAMVRISGKTEYYQERFSPRLQAAEEVAPSDEEAQSMLSQLVEVPPES
EDDLWAHIKEAIAAIQHPQLHDTVQRVMDEVGDQFRTSTAAISMHHAYRHGLLEHTTHMV
RAARALLPLYPQVDADLAIAGIILHDIGKIEEYEGDYAAKISRIGTLQGHVVLGFRTARK
AAIQSKLNPDLTERLEHIILSHQGEKEWGAAAMAATPEAVFVSMVDNLDAKMGMVQRVLR
NAPEGEEFSEYLMGLKTRVLLTPPDKS
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatttaaaaccgtccaagaactcaagcaactcgaccccgccatcgccgtcccc
ttccgcagcatctttatactgcgccgcaagacggtgaagaccgccaaaaacggcaatccc
ttcctcagtatcgaactcggcgatgccggtggcagtttcaccgccaacgcctttggcgat
tctgccgtatttgccgcactcgaaaacgtagccgaaggtgccatggttcgcatttcggga
aagactgaatattaccaagagcgcttctccccccgcctgcaagcagccgaagaagtcgcc
cccagcgatgaagaagcgcaaagtatgctcagccaactggtcgaagtgccacccgagtct
gaagacgacctgtgggcgcatatcaaagaagcgattgccgccatccaacacccacaactg
cacgacaccgtgcaacgagtcatggatgaagtgggcgaccaattccgcaccagcaccgca
gccattagtatgcaccacgcctaccgccacggactcttagagcacaccacacatatggtt
cgtgccgcccgtgcgctgttgccactgtatccgcaggtcgatgccgatctggcaatcgca
ggcattattctacacgacatcggcaaaatagaagaatatgaaggcgactacgccgccaaa
atcagccgcatcggcaccttacagggccacgtcgtgctcggtttccgcaccgcccgcaag
gcagcgatccaatccaagctcaacccggacctgaccgagcgcctcgaacacatcattctc
agtcaccaaggcgagaaagaatggggagccgccgccatggccgccacgcctgaagctgta
tttgtctccatggtcgacaacctcgatgccaaaatgggcatggtccaacgcgtccttcgc
aatgctccggaaggtgaagagttttccgaatacttaatgggcctaaaaacccgtgtcctg
ctcaccccacccgacaagagctaa
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