Calothrix sp. 336/3: IJ00_01920
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Entry
IJ00_01920 CDS
T03937
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
calh
Calothrix sp. 336/3
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
calh03021
]
IJ00_01920
Transcription machinery [BR:
calh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IJ00_01920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_r4
HTH_23
HTH_24
HTH_3
Sigma70_ECF
HTH_Crp_2
TnsD
LacI
Motif
Other DBs
NCBI-ProteinID:
AKG20229
UniProt:
A0A0T7BMB2
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All DBs
Position
461413..462195
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AA seq
260 aa
AA seq
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MAVSQSSMRSDGMELLQLYHQNPSIKLRNQLVQLHTGLVRKMAHKFSHQCNEPYEDLEQI
GYFGLIRAIERFDPSQGYAFSSFAVPYIRGEMLHFLRDRSTLLKIPRRWQELYNEGQKVR
KELAESLGRPPKDSEIAKELKVSVQEWQETKLAAQNRMPLSLDATVVNHVDCQVTLGEAL
PCPRSTSQQHQDEERQQLQGAINLLEEKPRMAVEMVFLKELSRKDAAKNIGTSPMTVTRY
LQKGINDLMSILQHQAVTTA
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaagtcagtcctctatgcggtctgatggtatggaactattgcagttatatcat
cagaatccctcgattaaactccgtaatcaactagtacaattacataccggtttagtacga
aagatggctcataagtttagccaccaatgtaatgagccctacgaagacttagaacaaatt
ggttactttggtctaattcgagccattgaacgcttcgaccccagccagggctatgctttt
agctcctttgctgttccctatattcgcggtgaaatgctgcactttttgcgcgatcgcagt
accctgttaaagattccccgtcgttggcaagaactctataacgaagggcaaaaagtccgc
aaagaattagccgaatcccttggtcgtccccccaaggactcagaaattgctaaggaactc
aaagtctctgttcaagaatggcaagaaactaaattagcagcccaaaaccggatgcccttg
agcttagatgctaccgtagtcaatcatgttgactgtcaagtaactctgggcgaagcttta
ccctgtcctcgttctacttcccagcaacatcaagacgaagaacggcaacaattgcaaggg
gcaattaatttgttagaagaaaaaccccgcatggcagtggaaatggtattcctcaaagaa
ctgtctcgcaaggatgcagcgaaaaatatcggcaccagtcccatgactgtcactcgctat
ctgcaaaaaggtattaacgacttgatgtctatcctccaacatcaagctgtaactacagcc
tag
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