Calothrix sp. 336/3: IJ00_08395
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Entry
IJ00_08395 CDS
T03937
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
calh
Calothrix sp. 336/3
Pathway
calh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IJ00_08395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calh03400
]
IJ00_08395
Enzymes [BR:
calh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IJ00_08395
DNA repair and recombination proteins [BR:
calh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IJ00_08395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
PIF1
DNA_pol_lambd_f
TraI_hel_assoc_N
NAT10_TcmA_helicase
AAA_22
NPHP3_N
nSTAND3
PhoH
UvrD-helicase
AAA
UvrD_C
NACHT
Motif
Other DBs
NCBI-ProteinID:
AKG21317
LinkDB
All DBs
Position
2042413..2044656
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AA seq
747 aa
AA seq
DB search
MSSSYQVNQQANNATPKQESITGVVERLTFHSEESGYTVARLQRPKVSELTTITGSFAGI
QPGQTLQLNGFWREHPQYGLQFQVTNYKETKPATITGIEKYLGSGLIKGVGPVTAKRIVA
HFGLETLDIIENQIDRLNEVSGIARKRITLIKKAWETQKAIKEVMIFLQTHGVSTTYAVK
IYKNYGDKSIGIVTNNPYQLAVDIYGIGFITADQIARNLGVPADSEFRYRSGLTHVLNEA
SEDGHCYLPQPELIEKASQCLKTNEHQPTEEGITEIIKTMSFQDELIRESAPDNTLLCYN
PAFFNTENNLALLIGQHLKNPIEPDINRVRTWLTKFTESRNVELSPQQQEAVEMAAYSKV
AVLTGGPGTGKTFSVRTIVQLWKAMGKSIALAAPTGRAAQRLTEMTGLEAKTVHRLLEFD
PKNMGFKRDMKNPLPQKAIIVDEASMLDLFLAYSLIKAVPEDGQILFVGDIDQLPSVGPG
KVLADFINSGKVPVVRLTQIFRQAQTSAIIRNAHQINQGQYPSMEPISDAPKSDCLWHGG
GQQPEHGVQAIAELIADFVPKLGFNPAIDVQVLAPMTRGLVGTRNLNNVLQQLINPPSPQ
KVEVTRGGVIFRVGDRVIQLTNDYNREVFNGDVGFITKIDTEEQEVIVQYQDRDVTYDYA
DLNELALAWSVTIHKSQGSEYPVVIMPIYTQHFMLLSRNLIYTGLTRAKRLAIIIGSKKA
ISMAVRSVNQKERYTQLQERLAQITAM
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtccagttcttaccaagtaaaccagcaagcaaataacgccactcccaagcaggaatcg
attacgggggtggtagaacgtttgactttccactccgaggaatctggttacacggtcgca
aggttgcaacgccccaaagtatcggagttaactacaattactggtagctttgcaggtatt
caaccaggacaaacgctgcaactcaatggattttggcgcgaacatccccaatatggcttg
cagttccaagttaccaattataaagaaaccaaaccagctacgattacgggtatcgaaaag
tatttaggtagcggtctaattaagggagttggtccagtaacagccaaacgaattgtcgct
cattttggcttggaaaccctggatattattgagaatcaaattgatcgcctgaacgaagta
agcggtattgccagaaaacgaattactttgattaaaaaggcatgggaaacccaaaaagcc
atcaaagaagtgatgatatttttgcagactcatggcgtatcaacgacttatgcagtcaag
atttataaaaattatggggacaagtcgattggaattgtcaccaacaacccataccaatta
gctgtcgatatttacgggattggctttatcacagccgaccaaattgcgagaaatctaggc
gtaccagcagattcggaatttcgctatcgttcgggacttacccatgtattaaatgaggca
tcagaagatgggcattgttatttgccccaacccgaattaatcgaaaaagcatcccaatgt
ctcaaaactaacgaacatcaaccaaccgaggaaggaataacagaaatcatcaaaaccatg
tctttccaggacgagttaatccgggaatctgcccccgataataccttgctttgctacaac
ccggcatttttcaataccgagaataacttggcattgctcatcggtcagcacttgaaaaat
cccatcgaacccgatattaaccgtgttcgtacctggttgaccaaatttaccgaaagccgc
aacgtcgaactttccccccaacaacaagaagccgtagaaatggctgcatactcgaaggtt
gcggtgttgacgggtggtccggggacggggaaaacctttagtgtacgtactattgtgcaa
ctgtggaaagcgatggggaaatcaatcgctctagcagcaccaaccggacgagcagcgcaa
cgattgaccgagatgacgggactggaagcaaaaaccgtgcatcgcttactagaattcgac
cccaagaatatgggattcaagcgggacatgaaaaatcctttaccgcagaaggcgattatc
gtcgatgaggcaagtatgttggatttatttctggcgtacagtttaattaaagccgttccc
gaagatgggcaaattcttttcgtgggggatatagatcagctgccatccgtcggtccgggt
aaggttttagcggatttcatcaattcgggaaaagtgcccgtggtgcgattaacgcagata
ttccggcaagctcaaacgagtgcaattattcgcaacgctcaccaaatcaaccaggggcaa
tatccaagtatggagccaatttctgatgctcccaaatccgattgtttgtggcatggagga
gggcaacaaccggaacatggggtgcaagcgatcgctgagttgattgcagatttcgttcct
aagttaggctttaatcccgcgatcgatgtgcaagttttggcaccgatgacgcggggattg
gtggggacgcgcaatttgaataacgtgttacagcaattgattaatcctcccagtccccag
aaagtggaagtaacgaggggtggagtgatttttcgggttggggacagggttatccaatta
accaacgactataaccgcgaagtattcaacggtgatgtgggatttattaccaagatagat
acggaagaacaggaagttatcgtccagtatcaagatagggatgtgacctacgactacgca
gatttgaatgagttggctttggcttggagcgttactatccacaaatcccagggttcggaa
tatccggtggtaattatgccgatttatacccaacatttcatgcttctgtcgcggaatttg
atttacacggggttaactcgtgcgaagagattggcaataattatcggttccaaaaaagcg
atcagtatggctgtgcgctcggttaatcagaaggaacggtatactcaattgcaggaaaga
ttggctcagattactgctatgtaa
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