Calothrix sp. 336/3: IJ00_10710
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Entry
IJ00_10710 CDS
T03937
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
calh
Calothrix sp. 336/3
Pathway
calh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ00_10710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calh03019
]
IJ00_10710
03400 DNA repair and recombination proteins [BR:
calh03400
]
IJ00_10710
Enzymes [BR:
calh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IJ00_10710
Messenger RNA biogenesis [BR:
calh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IJ00_10710
DNA repair and recombination proteins [BR:
calh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IJ00_10710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKG21665
UniProt:
A0A0T7BRD1
LinkDB
All DBs
Position
complement(2549102..2550544)
Genome browser
AA seq
480 aa
AA seq
DB search
MNYSTQISWQTVKSEFQRIWGYQDFRPPQGEIINCLLAKQDALILMPTGGGKSICFQLPA
LLQTGLTLVVSPLVALMENQVQELRERDLPAALLHSELPSFEKRQILQLIANQKIRLLYL
SPETLLSPPVWEKLSHPQIIINGIILDEAHCLVQWGDTFRPTYRRLGVVREALLKTKPPG
TKITLAAFTATADPLAQNIIQSTLNLINPVIFRLNPYRENIQPKVSIAWTPQGKKQQLLK
FIKARVNTSGLIYVRSRRDSENLAAWLQEMGYVTTGYHAGLGAVERRQIEAKWLSGKMPF
VVCTSAFGMGINKADVRWVVHFHAPLLLSEYVQEIGRAGRDGKPADALTLVSEPTGWLDP
EDKNRQKFFVDKLRSQYQIATRLSQKVPPTGEVNAIAKEFSDGELALALLHSQGKLQWLD
PFHYQIIATDKNQNFSQMQAVKQMRQYLYTRKCRWQFLLDAFGFGEEAKNCGHCDRCCKN
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaattactctactcaaatatcttggcaaacagtaaaatctgaatttcaaaggatttgg
ggatatcaagattttcgtccaccccagggggaaataattaactgtttgttggcaaaacaa
gatgctttaattctcatgccaacgggtggaggtaagtcaatttgttttcaattacctgct
ttattacaaactggtttaaccttggtagtttcaccgttagtagctttgatggaaaatcaa
gtgcaagagttacgtgaacgagatttacctgcggcacttttacatagtgaattaccttcc
tttgaaaaacgtcagattctacagttaattgccaatcaaaaaattagattattatattta
tctcccgaaactttacttagtccacctgtgtgggagaaattgtctcatccacaaattatc
attaatggcattatcttagatgaagctcattgtttggtgcaatggggtgatacctttcgt
cctacctatcgtcgattgggagtagtacgagaagctttattaaaaactaagccaccagga
acaaaaattaccttagcagcatttaccgcaactgccgatcccttggcacaaaatattatt
caatcaacgttaaatttaatcaatcctgttatcttccgcttaaatccctatcgagaaaat
attcagcccaaggtgagtatagcttggacaccacaggggaaaaaacaacaattattaaag
tttatcaaagctagggtgaataccagtggtttaatatatgttcgcagtcgcagagatagt
gaaaacttggctgcttggttgcaagaaatgggttatgtaactactggatatcatgcaggt
ttaggggcggtagagcgtcggcaaattgaggcaaaatggttgagtggtaaaatgcccttt
gttgtctgtacctcagcttttggtatgggtattaataaagcagatgtgagatgggttgta
catttccatgcaccattattattatcagaatatgtccaagaaattggacgtgctggtagg
gatgggaaacctgcggatgctttaactttggtgagtgaaccgacgggatggttggatcca
gaggataaaaatagacagaagttttttgtagataaactgcgatcgcagtatcaaattgcc
acaagactcagccaaaaagtacctcccactggagaagtgaatgcgatcgccaaggaattt
tccgatggagaattagccctagctttactccacagtcaaggaaaactgcaatggcttgac
cctttccattatcaaattattgctaccgataaaaatcagaacttttcccagatgcaagct
gtgaagcaaatgcgacagtacctatatactagaaaatgtcgctggcaatttcttctagat
gcctttggatttggggaagaagcaaaaaactgtggacattgcgatcgctgttgcaaaaat
tag
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