Calothrix sp. 336/3: IJ00_12925
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Entry
IJ00_12925 CDS
T03937
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
calh
Calothrix sp. 336/3
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
calh03016
]
IJ00_12925
Enzymes [BR:
calh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IJ00_12925
Transfer RNA biogenesis [BR:
calh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IJ00_12925
Prokaryotic type
tRNA splicing ligases
IJ00_12925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AKG22039
LinkDB
All DBs
Position
complement(3063338..3064519)
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AA seq
393 aa
AA seq
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MSYEKLEFSQATPVYSWANHALGHEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMCAIKTPFNGDKLEGKLKKIRQDIEAAIPTGFDENQDVEKT
VSNWQRWQNFKDLHSGVQDLEVKAMRQMGSLGGGNHFIEVCLDAENQVWLMLHSGSRNIG
NKLAKCHISTAKELAKMAGERLPDPDLANFVAGTEEFRAYWHDLQWAQDYARVNREVMMA
RFKRIVEKHLAGGKPTKPLLEVNCHHNYAEKEVHFGEEVYVTRKGAVRAQENDYGIIPGS
MGTKSYIVKGKGCADSFCSCSHGAGRVLSRSKAKNVYTLDDLIQQTAGVECRKDSGILDE
IPAAYKPIDQVMENQSDLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacgaaaagttagaattctctcaagctacacctgtttactcttgggcaaatcat
gccctaggacacgaagaaaccaaaatggcaaagaatgtcgcgtccttgccctttgtattt
aaacatgttgctttaatgccagatgttcaccttggaaaaggtgcgttagttgggtctgta
attgcgacaaaagaagctattattcctgcggctgtgggggtggatattggttgcggtatg
tgtgcaattaaaacaccctttaacggtgataaattagaaggcaaattgaagaaaattcgc
caagatattgaagctgcaattcccacgggatttgatgaaaatcaagatgtcgaaaaaaca
gtttctaactggcaacgttggcaaaacttcaaagatttacattctggtgtacaagactta
gaagttaaagccatgcggcaaatgggttccctcggaggtgggaatcattttatcgaagtt
tgtcttgatgccgagaatcaagtttggctgatgttgcattccggttcccgcaatattggt
aacaaactcgcaaaatgtcacatcagtactgccaaagaattggcaaaaatggctggtgaa
agattacccgatccagacttagcaaattttgtcgcagggacagaggaatttcgcgcctac
tggcatgatttacaatgggcacaggattatgctcgtgtcaatcgggaagtgatgatggca
cgctttaagcgtattgtggaaaagcacctcgcaggggggaaaccaactaaacctttatta
gaggtaaactgtcatcacaactatgctgaaaaagaggtacattttggcgaagaagtctat
gtaactcgcaaaggtgcagtgcgtgcccaagaaaatgactatggtattatacctggctct
atgggtactaaatcctacattgtgaagggtaagggttgtgctgatagtttctgttcctgt
agccatggtgcgggaagggtgttatcccgtagcaaagctaaaaatgtctacactttggat
gatttgattcaacaaacagccggggtggaatgtcgcaaagactctggaattttagatgaa
attcctgccgcttataaacctatagatcaggtaatggaaaatcaatctgatttagtggaa
gtggtggcaactttgaagcaagtagtttgcgttaaaggttaa
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