Calothrix sp. 336/3: IJ00_14730
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Entry
IJ00_14730 CDS
T03937
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
calh
Calothrix sp. 336/3
Pathway
calh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IJ00_14730 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
calh03021
]
IJ00_14730 (rpoC1)
03400 DNA repair and recombination proteins [BR:
calh03400
]
IJ00_14730 (rpoC1)
Enzymes [BR:
calh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IJ00_14730 (rpoC1)
Transcription machinery [BR:
calh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IJ00_14730 (rpoC1)
DNA repair and recombination proteins [BR:
calh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IJ00_14730 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
AKG22352
UniProt:
A0A0T7BTA7
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All DBs
Position
complement(3494863..3496740)
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AA seq
625 aa
AA seq
DB search
MRTAQNNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYIAILLDMPLRDVEQIVYFNSYVVLSPGNAETLSYKQLLSEDQWLEIEDQIYSEDSQ
LIGVEVGIGAEALLRLLADIQLEQEAETLREEIGNAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLHIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRSDPSVWDVLE
EVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGRPIVTPSQDMVLGAYYLTAENPGATKGAGRYFASLDD
VIMAFEQQNVDLHAYIYVRFDGEVESPEPDTQVVEETKNEDGTVTKLYKYRRVREDSQGN
LLSQYIRTTPGRVIYNKAIQEALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagaactgcccaaaataatcagtttgactatgtaaaaattggtttggcttccccagaa
agaattcgtcagtggggagagcggactttacctaatggtcaggtagtcggtgaagttacc
aagccagagacaattaactaccggacattaaagccagagatggatggcttgttctgtgag
cggattttcggtcctgcaaaggactgggaatgtcactgtggtaagtataagagagtacgc
catcgtggaattgtctgtgagcgttgtggcgtagaagtgacagagtcacgggtacgtcgt
caccgtatgggttacatcaaactggcagcaccagtcgcccacgtttggtatctcaaaggg
attcccagctatattgcgattctcctagatatgcccttgcgggatgtagaacaaatagtt
tacttcaactcctatgtggttctcagtcctgggaatgcagagactttaagttacaagcaa
ttactgagcgaagaccagtggttagaaattgaagaccaaatttatagcgaagactcccaa
ttgattggagtggaagttggtattggtgcagaagcgttattgcgtctgctggctgatatt
caactggagcaagaagcagaaactctgcgggaagaaattggcaacgccaaaggtcaaaaa
cgggcgaagttaattaagcggttgcgggtaattgataacttcattgccacaggttccaaa
ccagaatggatggtgatgacagtcattcctgtaattcctccagatttacgtcccatggtg
caattagatgggggacgttttgctaccagtgatttgaatgacttgtatcgccgggtaatt
aaccggaataatcgtctagctcgcttacaggaaattctggcgccagagattattgtccgc
aacgagaagcggatgttgcaagaagcagtggatgctttgattgataatggtcgtcgagga
cgaactgtagttggagcaaataatcgtcctttaaaatccctgtctgacattattgaaggg
aaacaggggcggttccggcaaaacctcctgggtaaacgggtagactactcagggcgatcg
gtaattgttgtcggtccaaaattgcatatccaccagtgtggtttgcctagggaaatggca
attgaattattccaaccatttgtgattaatcgcttgattcgcagtggcatggtgaataat
atcaaggctgcgaaaaaattaatttcccgttctgaccccagtgtttgggatgttttggaa
gaagtgattgaaggacaccccgtgttactcaaccgggcacccaccctgcaccgtttaggg
atacaagcgtttgagcctattttggtggaagggcgagccattcaattacatcccctagtt
tgtccagcatttaacgctgactttgacggagaccaaatggcggtacacgtacccctatcc
ttggaatcccaggcagaagcccgtttgttaatgctggcatccaataatattctctcccca
gcgacaggtagaccaattgtcacacccagccaagatatggtgttaggagcatattacctg
acagccgaaaatcctggggcaacaaaaggcgcaggtcggtacttcgcttctctagacgat
gtgattatggcgttcgagcaacaaaatgttgatttgcacgcctatatttacgtgcgattc
gatggagaagttgaatctccagaaccagacacccaagttgtggaagaaaccaaaaacgaa
gatggtaccgtcaccaagctgtacaaataccgtcgcgttagggaagacagtcaaggaaat
cttctttctcagtatattcgcactacaccaggtcgcgtaatttacaacaaagcgattcag
gaagcactagcaagttag
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