Calothrix sp. 336/3: IJ00_14735
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Entry
IJ00_14735 CDS
T03937
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
calh
Calothrix sp. 336/3
Pathway
calh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IJ00_14735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
calh03021
]
IJ00_14735
03400 DNA repair and recombination proteins [BR:
calh03400
]
IJ00_14735
Enzymes [BR:
calh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IJ00_14735
Transcription machinery [BR:
calh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IJ00_14735
DNA repair and recombination proteins [BR:
calh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IJ00_14735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AKG22353
LinkDB
All DBs
Position
complement(3496865..3500164)
Genome browser
AA seq
1099 aa
AA seq
DB search
MEPAFLLPDLIEIQRSSFRWFLEEGLIEELNSFSPITDYTGKLELHFLGHNYKLKEPKYS
VEEAKRRDSTYAVQMYVPTRLINKETGEIKEQEVFIGDLPLMTERGTFIINGAERVIVNQ
IVRSPGVYYKSEIDKNGRRTYSASLIPNRGAWLKFETDRNDLVWVRIDKTRKLSAQVLLK
ALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQQLLDSR
FFDPKRYDLGRVGRYKLNKKLRLSVPETVRVLTSTDILAAVDYLINLEFDIGNTDDIDHL
GNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAIKEFFGS
SQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPN
AGLIGSLATHAKVNLYGFLETPFRPVENGKVRFDLPVSYMTADEEDDLRVAAGDAAIDEN
GYLIGQVPVRYRQEFSTTTPDQVDYIAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQR
QAVPLLKPERPLVGTGLEAQAARDSGMVIVSRTDGDVTYVDATEIRVRPRVTDPNAKNPP
QEIRYTISKYQRSNQDTCLNQKPLVRMGERVVAGQVLADGSSTEGGELALGQNIIVAYMP
WEGYNYEDAILISERLVQDDIYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRNLD
EQGIIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKG
RVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISKILPLEDMP
YLPDGSQVDIVLNPLGVPSRMNVGQVFECLLGWAGHNMGLRFKITPFDEMYGEESSRRIV
HGKLQETRDETGRDWVYNPDDPGKIMVYDGRTGEPFDRPVTVGVAYMLKLVHLVDDKIHA
RSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEAL
NAIVKGKSIPRPGTPESFKVLMRELQSLGLDIAVHKVETQADGSSLDVEVDLMADQGNRR
TPPRPTYESLSRDSLDEEE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggaacccgcctttctgttgcccgatttgattgaaattcagcgttctagttttcgctgg
tttttagaagaagggttgatagaagaactgaactcctttagtccaattacagactacact
ggcaagctagaactacatttcttgggtcataactataaactcaaggagccgaaatatagt
gtagaagaggcaaaacggcgagatagtacctacgctgtccagatgtatgtaccgacgcgc
ctaatcaacaaagagactggagagattaaggaacaggaagtcttcattggggatttgccc
ctgatgacagaacgaggcacttttattattaacggtgccgaacgggtaattgtcaatcaa
attgtgcgatcgcccggtgtctactacaaatcagaaatcgacaaaaacggtcgtcgcacc
tattctgccagtttaatccccaaccgaggagcttggctgaaatttgaaacagaccgtaac
gacttggtatgggtacgtatcgacaaaacccgcaaattatcagcgcaagtactgctgaaa
gccctagggttgtcagataacgaaatttttgatgccctacgtcatcccgaatacttccaa
aaaaccattgaaaaagaagggcaattctcagaagaagaagccctcatggaattgtataga
aaattacgtcctggtgaacctcccaccgtattaggtgggcagcaactcttggattctcgt
ttctttgaccccaaacgttacgacttaggacgtgttggcagatacaaactcaacaaaaaa
cttcgcctttccgttccagaaacagtcagggttctcacctccacagacatcctcgccgcc
gtagactacctgatcaacctagaattcgatatcggtaacaccgatgacattgaccaccta
ggaaatcgccgagtcagaagtgtcggtgaattactccaaaaccaggtcagagtcggtcta
aaccggttagaaagaattattcgggaaagaatgacagtatccgatgctgaggtacttacc
cccgcatccctcgtcaaccccaaacccctagtggctgccattaaagaattctttggttcc
agccaattgtcccagttcatggatcagaccaatcccttagcagaattaacacacaagcgg
cgactttcagcccttggtccagggggtctcaccagagaacgggcaggatttgcggttcgg
gatattcaccccagccattacggacgaatttgtcccatcgaaactccagaaggaccaaac
gcaggcttaattggttccctagctacccatgccaaagttaacctctatggcttcctagaa
acgcccttccgtcctgtggaaaatggcaaggtgcgttttgatttacccgtaagttacatg
actgcggacgaagaagatgacctccgggtagcagcaggggatgccgcaatcgatgaaaat
ggctatttaattggtcaggttccagtgcgctatcgccaggagttctcgacaaccaccccc
gaccaagtcgattatatcgctgtgtcgccagtgcaaattgtctccgtagctacgagcatg
attcctttcctggaacatgatgacgcgaaccgagctttgatgggttccaacatgcaacgg
caggcagttcccctcctcaaaccagaacgccccctagtcggtactgggttagaagcccag
gcagccagagactctgggatggtaattgtcagtcgtaccgatggtgatgtcacctatgtt
gatgccacagaaattcgtgtacgtcctagggtgacagaccccaatgccaaaaacccaccc
caagaaattcgttacaccatctccaagtatcaacgttccaaccaagatacttgcttgaat
caaaagcccttggtgcgtatgggtgaaagggtagtggcagggcaagtcttagcagatggt
tcttccaccgaaggtggggaattagccctaggacaaaatatcatcgtcgcttatatgcct
tgggaaggttacaactacgaagacgcgattttaatttccgagcgcttagtacaagatgat
atttatacctcaattcacattgaaaaatacgaaattgaggcgcggcaaacaaaactcggt
cccgaagaaatcacccgcgaaattcccaacgttggggaagatgctctacgcaaccttgat
gaacagggaattatccgcattggcgcttgggtagaagctggagatatcttagttgggaaa
gtgactcccaaaggggaatcagaccaaccacccgaagaaaaactcctacgtgccatcttc
ggtgaaaaagccagagatgttagagataactccttacgagttcccaacggtgaaaaaggg
cgggtagttgatgtccgactatttacccgtgagcagggagatgaactaccaccgggagcc
aatatggtggtacgggtatatgttgcccaaaaacggaaaatccaggtaggcgacaaaatg
gcaggtcgtcacgggaataaagggattatttctaagatattgcccttagaggatatgccc
tatttaccagatggtagtcaggtagatatcgtcttgaatcccctgggtgtaccctcacgg
atgaacgtggggcaggtatttgaatgtctcttgggttgggcaggtcacaacatgggtctg
cggttcaagattactccctttgatgaaatgtatggtgaggaatcttcccggagaattgtt
catggcaagttacaggaaaccagggacgaaacaggacgagattgggtctataaccccgac
gatccgggcaagattatggtctatgacgggcgcacaggtgaaccctttgaccgtccagtc
acagtgggtgtggcgtatatgctgaaactagttcacctagtagatgataagattcacgct
cgttccactggtccttactccctcgttacccaacaacccctgggtggtaaagctcaacag
ggtggtcagagatttggagaaatggaagtatgggcactggaagcctttggagcagcttat
accttgcaagaattgctgacagtcaaatccgacgatatgcaaggaagaaatgaagcgtta
aacgcgatcgtcaaaggaaagtccattccccgacctggaacaccagaatccttcaaggta
ttgatgcgagagttgcagtccttaggcttagatatcgctgtgcataaggtggaaacccaa
gcagatggtagctccttggatgtagaagtagacctcatggctgaccaaggaaatcgtcgt
actccaccacgtcctacctacgaatctctttctcgtgattccctagatgaagaggaatag
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