Calothrix sp. 336/3: IJ00_15810
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Entry
IJ00_15810 CDS
T03937
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
calh
Calothrix sp. 336/3
Pathway
calh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ00_15810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calh03019
]
IJ00_15810
03400 DNA repair and recombination proteins [BR:
calh03400
]
IJ00_15810
Enzymes [BR:
calh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IJ00_15810
Messenger RNA biogenesis [BR:
calh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IJ00_15810
DNA repair and recombination proteins [BR:
calh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IJ00_15810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
GerE
ResIII
HTH_5
HTH_11
HTH_24
HTH_38
Helicase_Sgs1
MarR
Motif
Other DBs
NCBI-ProteinID:
AKG22543
UniProt:
A0A0T7BUK2
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All DBs
Position
3773473..3775635
Genome browser
AA seq
720 aa
AA seq
DB search
MSEFPHLERALKYHFGYDQFRPGQRQVIEAGLQNRDLLVVMPTGGGKSLCFQLPALIKGG
LMVVVSPLIALMQDQVEALRNNNIPATFLNSSLNQYQVRSREHAILNGKVKLLYVAPERL
VSDRFLPFLDLVQHQVGISAFAIDEAHCVSEWGHDFRPEYRQLILLRQRYPKVPTFALTA
TATDRVRADIIQQLGLREPTIHIASFNRQNLYYEVREKNKGSFAELLELIQDTEGSVIIY
CLTRKKVDEIAFKLQHHQLSALPYHAGLSDEERSKNQTQFIRDDVRIMVATIAFGMGINK
PDVRLVVHFDIPRNLESYYQESGRGGRDGEASRCTLFYSYGDVKTIEYLINQKPDPQEQL
IAKQQLRQVIDYAEGTDCRRVIQLGYFGERFPGNCGNCDNCRSPKPMQDWTIEAMKFLSC
VARCKERFGMAHIIDVLRGSKNQKVTQYEHDQLSTYGIGKDKTVDEWRMLGRSLLHQGLL
EQTSDGYAVLKLNALSWEVMRKKRTVSLAVPVVQKISWKERSSKAEAAEMLLMRLRSLRK
NLADQQSVPPYVVFPDSTLRLMAQVQPQSLEEFGKLSGVGSHKLAQYGEKFIHEIVAYRQ
ENTAKSVNSQVNLGNGGNFPTETELLTLQLHKQGLSVEEIAEQRNLRPTTIIRHLADLID
KNQPVNFDLLVTPEKQQKICQVLDILGDISLTPIKEYLGNNYSFDEIRLARGKWRRNHKS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagtttccccacttagaaagagcgcttaaatatcacttcggttatgatcagttc
cgtcctggacaaaggcaagtgattgaagcagggttgcaaaatcgggatttattggtggta
atgccgacgggtggggggaaatccttatgcttccagctaccagcattgataaaaggggga
ttgatggtagtggtgtcacccttaattgccttaatgcaagatcaggtggaagcattacgg
aataataatattccggcaacttttttgaatagtagtttaaatcagtatcaagtgcgatcg
cgggaacacgctatcttgaatggcaaggtaaaattgctctatgtagcaccggaaagactt
gtcagtgatagatttctcccttttctggatttagtacaacaccaagtcggtatttccgct
tttgccattgatgaagctcattgtgtatcggaatggggacatgattttcgtccagagtac
cgccaattaattttactacggcaacgctaccccaaggttcccacctttgctttgacagcc
actgcaactgatagggtacgtgctgatattattcaacagttagggttgcgagaaccaact
attcatattgccagttttaatcggcaaaatctttattatgaggtacgggaaaaaaataag
ggttcctttgctgagttattagagctaattcaagacacagagggttcggtaattatttac
tgtctgactcgcaaaaaagttgacgaaatcgcctttaaattacaacatcatcaactttct
gccctaccctaccatgcaggtttatccgatgaagaaaggtcgaagaatcaaacacaattt
atccgtgatgatgtgagaatcatggtggcaactattgcctttgggatggggattaataag
cctgatgttcgcttagttgtacattttgatatccccagaaatttagaaagctactatcaa
gaatcgggacgaggtggtagggatggggaagcatcgcgctgtacattattttatagttat
ggtgatgtcaaaaccattgaatatttaattaatcaaaaacctgacccccaggaacaatta
attgctaaacaacagttacggcaagttattgactatgcggaaggaacggattgcagacga
gtaattcaactggggtattttggtgaaagattccccggtaattgtggtaactgtgataac
tgccgttcacccaaaccaatgcaagattggacaattgaagcgatgaaatttctatcttgt
gtggcaaggtgtaaagaaagatttgggatggctcatattatagatgtgttacggggttct
aaaaatcaaaaagttacccagtacgagcatgatcaactttctacctacggaattggtaag
gataaaaccgttgatgagtggcgaatgttaggacgttccttattacatcaaggtttacta
gaacaaactagtgatggttatgcagttttaaaattaaatgctttgagctgggaagtaatg
cgaaaaaaacgtactgtttcccttgcggttcccgtggtacagaagattagttggaaagag
agaagtagcaaagcagaagccgcagaaatgttattaatgagattgcgatcgctacgtaaa
aatctggctgatcaacaatccgttcccccctatgttgtcttccctgactcgactctgcga
ctaatggcacaggtacaaccccaaagtttagaggagtttggtaaactttctggtgtgggt
agtcacaagcttgcccagtatggagaaaaatttattcatgaaattgtcgcctatcgtcaa
gaaaatacggcgaagtcagtaaatagccaagtaaatcttggaaatggtggcaactttccc
acggaaacagaattattaaccctacaattacacaagcagggattgagcgttgaggaaatt
gccgagcagagaaatctccgtccgacaacgattatccgccatcttgccgatttaattgac
aaaaatcaacctgttaacttcgatttgttggtgacaccagaaaaacaacaaaaaatctgc
caggtgttagatatcctcggtgatatatccctcacccctatcaaagaatatttaggcaat
aattatagctttgatgaaattcgtttggctcgtggtaaatggcgacggaatcacaagtca
taa
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