Calothrix sp. 336/3: IJ00_17250
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Entry
IJ00_17250 CDS
T03937
Name
(GenBank) ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
calh
Calothrix sp. 336/3
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
calh03016
]
IJ00_17250
Enzymes [BR:
calh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IJ00_17250
Transfer RNA biogenesis [BR:
calh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IJ00_17250
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
YnaL
Motif
Other DBs
NCBI-ProteinID:
AKG22787
UniProt:
A0A0T7BUQ4
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All DBs
Position
complement(4149004..4151058)
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AA seq
684 aa
AA seq
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MEKGTLVEFRLQSERRLGVVDRPDGKTRWFVVDERGQSHSLAPRQVTYTVTGQAYEPTQI
GKFLAEVQPYLDPSSLEVAWELLVEDAETVTPTSLANLLFSESAPYQCYAAHYLLSDDKI
YFKQKGDAYEPRTTAQVAERKHQLEVEALKAKGQQEFLVRVEQALQGEPVEWQKHDRHRL
EAIEKYAALLADVVRTGVNQDSLARAYPPPAPVLETMNLLGRSATPHGAYQLLVDLGCWS
PHENLFLRRSSIPVQFPTKVVEVAQQRLDMHPPDPDANRVDLTHLKVYTIDDESTTEIDD
GVSWETLPDGRERLWVHIADPTRWLIPEDDLDLEARKRGTTVYLPTGMVPMFPELLATGP
MSLVQGKVCCALSFGVVLDDLGAVADYTIHASVIKPTYRLTYEDVDEMLDLQAEPEIAAI
ATWARKRKAWRNHQGAISINMPEAMIKVKGDDISIDILDDSHSRELVAEMMILAGEVAAR
YGQAHNIPLPFRGQPQPELPPEEELIQLPAGFVRSCAMRRCMPKSEMSITPLRHAGLGLD
TYTQATSPIRRYSDLLTHFQLKAHLRGDAPPFNADQLRDVMITVSTITQEVTMVERQTNR
YWALEYLRRQPEQVWEVVVLMWLREDSGLALILLEDLGLQLPMLFRRPVNLGEQVLVKVT
LADPQKDVIQFQEIIYQEAQGAVN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttagactacaaagcgaacgccgtctgggtgtagta
gaccgtccagatggtaagacccgttggtttgtagtagatgaacggggacaatcccacagt
ctcgcccctagacaagtcacatacaccgtgacagggcaagcttacgaaccaacacaaatt
ggcaagtttttagccgaagttcagccatacctcgacccctccagcttggaagtagcgtgg
gagctactggtagaagatgcggaaactgtcacccctacgtccctggcaaatttgctattt
tccgaatctgccccctaccagtgctatgctgcccactatctattatcagatgacaaaata
tactttaaacagaagggtgatgcttacgaaccccgtaccacagcccaggttgctgaacgt
aagcatcagttagaagtggaagccctcaaagccaaagggcagcaagaatttctagtcagg
gtagaacaagcgctccaaggtgaacccgtggaatggcaaaaacacgaccgtcaccgcttg
gaagccatagaaaagtatgctgccctcctcgctgatgttgtgcgtacgggagtcaatcaa
gattcccttgcccgtgcctacccaccgccagcgccagtcctggaaacgatgaatctgctg
gggcgttctgcaacaccccatggagcctatcaacttttagtagacctgggttgctggagt
ccccacgaaaacttattcttacggcgatcgtcaattccagtccaatttccaacaaaggtg
gtagaagtggcgcaacagcgattagacatgcatccgcccgatcccgatgccaaccgtgta
gatttaacccatctcaaggtatatacgattgatgatgaaagtaccactgagattgatgat
ggggtgagttgggaaacactacccgatggacgggagcggttatgggtacacatcgctgac
ccgactcgctggttgataccagaagacgatttagacctagaagctaggaagcgtggtaca
accgtatatttacctactggaatggttccgatgtttccagagttactggcaacaggaccg
atgagcttagttcagggaaaagtctgctgtgctctcagctttggggttgtccttgatgac
ttaggagcagttgctgattatactattcatgccagtgtcataaagcctacataccgcctc
acctatgaagatgtagacgaaatgctggatttgcaggcagaaccggaaatcgccgcgatc
gccacttgggcaagaaagcgtaaagcttggcgtaatcatcaaggagccatcagcattaat
atgccggaggcaatgataaaagtcaaaggggatgatattagtattgatattcttgatgac
tcccattcccgcgaactcgtagcagaaatgatgattctggctggagaagttgctgctcga
tacggtcaagcacataacatccccctaccctttcgcggacaaccccaaccggaactgcct
ccagaggaagaattaatccaactacccgcaggttttgtccgttcctgcgccatgcggcgg
tgtatgcccaagagtgaaatgagtattacccccctccgtcacgcggggctaggtttagat
acttacacccaggcaacatcacccattcgccgttatagtgacttactcacccacttccag
ttgaaagcacacctgcgtggtgacgcgcctcctttcaatgcggatcaactgcgagatgtg
atgattaccgtttctacgattacccaagaagtcacaatggtagagcggcagactaataga
tattgggcattagagtatttacgccgtcagccagaacaagtttgggaagtagtggtatta
atgtggctgcgggaagatagtggattagcattgattctcttagaagatttaggcttacag
ttaccaatgttgttccgtcgtccggtaaatttaggtgagcaagtcttggtgaaagtaacc
ctagctgaccctcaaaaagatgtgattcaattccaagagattatttatcaggaagcccag
ggagctgtcaattaa
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