Calothrix sp. 336/3: IJ00_18665
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Entry
IJ00_18665 CDS
T03937
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
calh
Calothrix sp. 336/3
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calh03400
]
IJ00_18665
DNA repair and recombination proteins [BR:
calh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IJ00_18665
Archaeal homologous recombinant proteins
IJ00_18665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
Rad50_zn_hook
AAA_29
AAA_21
ABC_tran
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-ProteinID:
AKG23023
LinkDB
All DBs
Position
4488291..4491317
Genome browser
AA seq
1008 aa
AA seq
DB search
MIPVHLTLKNFLSYCDASLDFRGLHTACISGANGAGKSSLLEAITWAIWGESRAAAEDDV
IHSGSKDVRVDFTFQTSQQTYRVIRTRQRGGSGGLEFQIATPSGFKALTGKGIRATQDLI
LEHIKLDYDTFINSAYLRQGRADEFMLKRPSERKEILSELLKLHQYDELEERAKDLSKQF
KARVEELDRSLENMASQLQEKEAIATKQTTLENELNQLQQLQQFEQIQLQSLQVVQHQRQ
TWEENLSFVRQQLQNLTQDSDRLQQEQRVTQTQMQTLGELFQQETEIQAGYQHYQHLLSQ
EESFNLKFAEYTRAQQTRQQKQQQLTKQIHLLERQLQQAQAQLEALREQETEIQQTLSKA
AEVEAAIAQLTTARQRLAQYDELQMRVTPILQQRQHLQSQIDKTQATLSARLEQIQATEN
QLQRQQRRQPQLQQAVIEVATQIEALEKQRVYLQRVQEKGQERRHFIERLQAHQRDYEKL
LGELEQKLQMLQTPDAICPLCERPLDEHHWNRVVDKTNAEYKDTEGQLWVVREQMAFSDR
EIQVLRQEYREVSQKLSPYESLREQRGQLAAQLEVTTDVGQQLQQIAREKQELERQLELG
DYAQDKQAELQQLAAYLEELNYNEKNHALARSEVEKWRWAEIRQGQIKDASKRQAQVAAR
KPEIEAQIGELNRRIQEEGVNSECAREIAALDRYMTELGYNTEQHNQLRSALRQGQSWQL
RHQQLLTAQEQYPQLQQRAQELAIALQARLQEKQRLASNLNEIVQQLEATANPRSQIHSL
EQQLASRRRQLDEYLGQLGQIKQMMHQLATLEIQYGQQQQQLQEAKRQQRIYQELAQAFG
KNGIQTLMIENVLPQLEVETNQLLSRLSANQLHVQFVTQKAGRNGKSTKKNAKMIDTLDI
LIADARGTRAYETYSGGEAFRINFAIRLALAKLLAQRAGAALQLLIVDEGFGTQDAEGCD
RLIAAINAIAPDFACILTVTHMPHLKEAFQARIEVHKTQQGSQVRLMS
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgattcccgttcacctgacgctaaaaaattttttgagttattgtgatgctagtttagat
tttcgtggcttgcataccgcttgtatttctggtgcaaatggagccggaaaatcctcttta
ctggaagcgattacttgggcaatttggggagaaagtcgagctgcggcagaagatgatgtt
attcatagtggttctaaggatgtacgggtagactttacttttcaaaccagtcaacaaacc
tatcgggtgattcgtactcgacaaaggggaggaagcggaggtttagaatttcaaattgcc
acacccagtggattcaaagctttgacgggtaaggggattcgagccacccaggatttgata
ttagagcatattaagctagattacgatacatttattaactccgcttatttacggcaaggg
cgagcggatgagtttatgttgaagcgtcccagtgagcgtaaggaaattctgtctgaactg
ctaaaattgcatcaatatgatgagttagaagaacgggcgaaggatttatcaaaacagttt
aaggcaagggtggaagagttagaccgttccttggaaaatatggcttcccaactgcaagag
aaagaggcgatcgccaccaagcaaactaccctggaaaatgaactcaaccaactgcaacaa
ctccaacaatttgagcagattcaattgcaaagtttacaggtagtgcaacaccaacggcaa
acctgggaagaaaacttaagttttgttaggcaacagttacaaaatcttacccaggatagc
gatcgcctgcaacaggaacaaagggtgactcagactcagatgcaaactttgggggaatta
tttcagcaagaaacagaaattcaagccggttatcaacactatcaacatctcctatcccag
gaagaaagctttaacctgaaatttgccgaatatacccgcgctcaacaaacccgacagcaa
aaacagcagcaattaactaaacaaattcatctcctagagcggcaattacaacaagcacaa
gcacaattagaagcactgcgggaacaggagacagaaattcaacaaaccctaagtaaagca
gcagaagtagaagcggcgatcgcccaattaaccaccgcccgccaacgcttggcgcagtat
gatgagctacagatgcgtgtcacccccatcttgcaacaaagacaacatttacaaagccaa
attgataaaactcaagccaccctcagcgctcgtttagaacaaattcaagctacagaaaat
caactgcaacgacaacaacgtcgccaaccccagctgcaacaagcagtcatagaagtggca
acacaaatcgaagctttagaaaaacaacgggtatatctgcaaagggtacaggaaaaaggg
caggaaaggcggcattttattgaacgcttgcaagcacaccaaagagactacgaaaaatta
ctaggtgagctagaacagaagttacaaatgttgcagactcctgatgcaatttgtcctttg
tgtgagcgtcctttggatgagcatcactggaatcgggtagtggataaaaccaacgccgaa
tataaggatacggaggggcaactctgggtagtacgggaacaaatggctttttccgatcgg
gaaattcaggtattacgccaggaatatcgggaagtctcccaaaaattatccccctacgaa
tctctgcgggaacaaaggggacagttggcagcacagttggaagtgacaacggatgtgggg
cagcaacttcagcaaatcgccagggaaaagcaggagttagagcggcagttagaattggga
gattatgcccaggataagcaggcagaattacagcaactagcagcttatttggaagaattg
aattacaacgagaaaaatcatgccctggctcgcagtgaagtggaaaagtggcgctgggca
gagattcgtcaggggcaaattaaggatgcgagcaagagacaggcgcaggtagctgccaga
aaaccagagattgaggcacagattggcgagttaaaccgcagaattcaggaagagggcgta
aattcggaatgtgcgcgggaaatagctgccttggataggtatatgacagaactgggttac
aataccgaacaacataaccaactgcggagcgccctacgtcaggggcaaagttggcaatta
cgccatcaacaattattgacagcccaggagcaatatccccaacttcagcagcgtgcccag
gaattagcgatcgccctccaagctaggttacaggaaaagcaacgactggcgagcaactta
aatgagattgtgcagcaactagaagcaaccgccaaccctcggagtcagatacatagttta
gaacagcagctagcaagtaggcggcgacagttggatgaatatctggggcaattggggcaa
atcaaacagatgatgcatcaattagcgactctagaaattcagtatgggcagcaacaacaa
cagctccaggaagcaaaacggcagcaacgaatttatcaggagttagcccaggcatttggt
aaaaatggtatccaaacactgatgattgagaacgtgttgcctcagctagaagtggagaca
aatcaactactttcgcggttgagtgcgaatcagttacatgtacaattcgttactcaaaaa
gccggacgtaacggtaaaagtacgaagaaaaacgccaaaatgattgacaccctagatatt
ctcattgccgacgctaggggaacccgtgcttatgaaacctattccgggggggaagcattt
cggattaactttgcgattcgtttagctttagcaaaattacttgcccagcgtgccggagcc
gctttacagttactgatagttgatgagggatttggtactcaagatgcggaaggttgcgat
cgcctgattgctgcgattaacgcgatcgctcctgattttgcctgtatcctcaccgttacc
catatgccccacctcaaggaagcatttcaagctcggattgaagtacataagactcagcaa
ggttcccaggtacgtttgatgtcttaa
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