Calothrix sp. 336/3: IJ00_19530
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Entry
IJ00_19530 CDS
T03937
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
calh
Calothrix sp. 336/3
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IJ00_19530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
calh03021
]
IJ00_19530
Transcription machinery [BR:
calh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IJ00_19530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AKG23173
LinkDB
All DBs
Position
4704193..4705368
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AA seq
391 aa
AA seq
DB search
MNQANNVLESIYQPDLETIAPSDMELEELLIDDEEDLLISDEGELDEEFLEAQSDEEDTK
SEKTAKSRRRSQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREK
LCQQLDRDPKDSEWAEAVQIPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLS
FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI
SRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG
DFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN
VTRERIRQIEAKALRKLRHPNRNSVLKEYIR
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggctaacaacgtactcgaaagcatttatcagcctgacttagagacaatagct
ccatcggatatggagttagaggaactcttgatagatgatgaagaggacttgctaatcagc
gatgaaggcgaactagacgaagagttcttagaagctcagtctgacgaggaagatacaaaa
tcagagaaaaccgccaaatcgcgtcggcgatcgcaaacaaagaaaaagcactacaccgaa
gattcaattcgtctttatctgcaagaaattggtcgcattcgtttgttacgtgctgatgaa
gaaattgaattggcaagaaaaatcgccgatttactggagctagaacgcatccgggaaaaa
ctttgccaacaattggatcgagaccccaaggatagcgaatgggcagaggcagtacaaata
ccgttgccccaattccgttaccgcttgcacatcggtagacgggcaaaagataaaatggtg
caatctaacttgcgtcttgtagtttcaattgccaagaaatacatgaatcgcggtttatca
ttccaagacttaattcaagaaggaagtctcggtttgattcgagctgcggaaaaatttgac
cacgagaaaggctataaattctctacctacgccacatggtggattcgtcaggcaatcaca
agggcgatcgcagatcaatctcggacaattcgtctgccagtccacctatacgaaaccatt
tctcgcatcaagaaaacaactaaattactctcccaggaaatgggtcgcaaacccaccgag
gaagaaattgctacccggatggaaatgaccattgaaaagctgagatttattgccaaatca
gctcaattacccatttccctagaaacacccattggtaaggaagaagattcccgattgggc
gatttcattgagtccgatggtgagacaccagaagaccaagtttctaagaacttactccga
gaagacctagaaaaggttctagatagtcttagcccccgtgaacgtgatgttttacgtttg
cgctatggtttggatgacggtcggatgaaaaccctagaagaaatcggtcaaatcttcaac
gtcacccgcgaacggattcgccaaatagaagcaaaagcactgcgtaaactacgccacccc
aaccggaatagtgttctgaaagaatacatccgttaa
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