Calothrix sp. 336/3: IJ00_20300
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Entry
IJ00_20300 CDS
T03937
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
calh
Calothrix sp. 336/3
Pathway
calh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ00_20300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calh03019
]
IJ00_20300
03016 Transfer RNA biogenesis [BR:
calh03016
]
IJ00_20300
Enzymes [BR:
calh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IJ00_20300
Messenger RNA biogenesis [BR:
calh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IJ00_20300
Transfer RNA biogenesis [BR:
calh03016
]
Prokaryotic type
tRNA degradation factors
IJ00_20300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_NusA_1st
KH_SLS1_2
Amidase
Motif
Other DBs
NCBI-ProteinID:
AKG23309
LinkDB
All DBs
Position
4893151..4895301
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AA seq
716 aa
AA seq
DB search
MGEFEKSISFDGRDIRLKVGLLAPQAGGSVLIQSGDTAVLVTATRSQAREGIDFLPLTVD
YEERLYAAGRIPGGILRREGRPPEKATLTSRLIDRPLRPLFPSWLRDDLQVIALTMSMDE
QVPPDVLAVTGASIATLLAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGS
PDGVIMVEAGANQLPERDIIEAIEFGYEAVQDLIQAQLDLVAELGIELVKEEPPEVDLTL
ENFIRDRATSEIKQILAQFDLDKTARDSALDVVKDTIATAIADLPEDDAIRVAATANAKA
LGNTFKDITKKLMRRQIVEDNVRVDGRKLDQVRPVSCQVSLLPQRVHGSGLFNRGLTQVL
SICTLGTPGDAQNLPDDLQADQGKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERA
MLPVLPPKDKFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIK
EGEEIRVLTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKISGLSLDVIAQAIHQAKEAR
LHILEKMLQAIDEPRTEMSPYAPRLLSIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIE
DDGTVTISAVDENKAKKAKNIIQGMTRKLNEGDVYVGRVTRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVSVGDEVIVKVREIDNKGRINLTRLGIHPDQAAAAREAATK
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatttgaaaagtcaatatcctttgacggacgggatattcgactgaaggttggt
ctattagctccccaggctggtggatcggtgttgatacaatctggggatacagcagtttta
gtcacagctacgcgatcgcaagccagagaaggcatagattttctccccttgactgtagat
tatgaagaaaggctatatgctgcggggagaatcccaggaggaatactacgacgggaaggt
cgtccgccagagaaggcaaccctgacaagtcgtttaattgaccgtccattgcgtccgtta
ttcccatcatggttacgggacgatctgcaagtgattgccctaactatgtccatggatgag
caagtaccccccgatgtgttagctgttacaggggcttccattgcgactttactagcaaaa
attccttttaatggtccgatggcggcggtacgtgtgggactagtgggagatgatttcatt
atcaaccccacctatgccgaaattgaagcgggagatttggacttggtggttgctggttcc
cctgatggggtaatcatggtggaagctggagccaaccaactgccagaaagggatatcatc
gaggcaattgaatttggctatgaagctgtccaggatttaattcaagcacagctagattta
gttgcggaattagggatagaacttgtcaaagaagaaccaccagaggtggatttgactctg
gaaaactttatccgcgatcgcgccacttccgaaatcaaacaaattctggcacagtttgac
ctggataaaaccgcacgggacagcgccctcgacgtagttaaagatacaattgccacagcg
atcgccgacctgccagaagatgacgccatccgagttgctgccaccgctaacgctaaagcc
ctcggtaacaccttcaaggacattaccaagaaactgatgcgtcgccaaattgttgaagat
aatgtgcgcgtagatggtcgcaaactggatcaagtccgtcccgtttcctgccaagtcagt
ctcttgcctcaacgtgtccatggtagtggtctgttcaatcgtggattgactcaagtactg
tccatctgtaccttaggaacccccggtgatgcccaaaacctgcccgacgatctgcaagcc
gatcagggaaaacgttatctgcatcattacaacttccctcccttctccgtcggtgaaact
aaacccctacgcgccccaggacgacgggaaattggtcacggtgcccttgcggaacgggca
atgttacccgtactaccaccaaaggataaatttccctacgtaattcgcgttgtatcggaa
gttttatcttctaatggttctacctccatgggttccgtttgtggttctacccttgccctc
atggatgcaggtgtaccaattgctaaacccgtgagcggagcagcaatgggtctaattaaa
gaaggcgaagaaatccgtgttttaaccgatattcaaggtatcgaagatttcttgggtgat
atggactttaaggtagcgggtactgatagcggtatcactgccttgcaaatggatatgaaa
atttccgggttatccctagatgtcattgcccaggcaattcatcaggcaaaagaagcacgg
ctacatattctggagaaaatgctccaggcgatcgatgaaccgcgtacggaaatgtctccc
tatgcgccacgactcctgagtatcaaaattgactcagacatgattggtttagtcatcgga
cctggtggtaaaactatcaaaggcattaccgaagaaactggtgccaaaatcgacattgaa
gatgacggtactgtgactatctccgccgtcgatgagaacaaggcgaagaaagccaaaaat
atcatccaaggcatgactcgcaaactgaatgaaggtgatgtttacgtaggtcgtgtgacg
cgaattataccgattggtgcatttgtggaattcttgcccggtaaagaggggatgattcac
atttcccaactggctgattatcgtgtcggcaaggttgaggatgaagtttctgtgggcgat
gaagtgattgtcaaagtccgggagattgacaacaagggaagaattaacctaactcgttta
ggtatccatcctgatcaagctgccgccgccagagaagctgcaacgaagtaa
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