Calothrix sp. 336/3: IJ00_21940
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Entry
IJ00_21940 CDS
T03937
Name
(GenBank) polyamine ABC transporter substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
calh
Calothrix sp. 336/3
Pathway
calh02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
calh00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IJ00_21940
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
calh02000
]
IJ00_21940
Transporters [BR:
calh02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
IJ00_21940
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_6
SBP_bac_8
SBP_bac_1
Motif
Other DBs
NCBI-ProteinID:
AKG23589
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All DBs
Position
complement(5268908..5270071)
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AA seq
387 aa
AA seq
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MHRRYFVQGATALTISQLLVGCSHNNTSKLTVKFLRNSLPGQVVEKFRQSLKSQAKLEFS
LEGQLGDIFQQLQNWQEKKEPQAKQGWNLPLGQPEPQVADLVTVGDYWLKSAIEQKLIQP
LDVSKLQNWSKLPPKWQNLVRRNEKGEIDSQGKIWGAPYRWGTTVIVYNREKLKSLGIQP
QDWDDLWRKELGDRISLLDQPREVIGLTLKKLGKSYNTTKLSTVSNLETELKALHQQTKF
YSSTRYLEPLLIGDTWLAVGWSNEVLPFINRYPQFTAFVPKSGTSLWADIWVKPGNPSAQ
EQKNLAATNLPDQWIDFCWSDNIAQTISLLTRANSPIPVSIDQKNISSALRNVLMADATT
LNQSEFILPLAANVSQEYGEFFEKMQA
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgacgatattttgtacaaggagcgacagcacttacaatctcacaactattggta
ggatgtagtcacaacaatacaagcaaactcaccgttaaatttttgagaaattcccttcct
gggcaagttgttgagaaatttcgccaaagtttaaaatcccaggcaaaactagagttttcc
ttggagggacaattaggagatattttccagcaattacagaattggcaagagaaaaaagaa
cctcaagccaaacagggatggaatttacctctaggacaaccagaaccccaggtagctgat
ttggtgacagtgggggattattggttaaaatctgcgattgagcaaaagttaattcagccc
ttggatgtttcaaagttgcaaaactggtcaaaactacccccaaagtggcaaaatttagtc
cggcgcaacgaaaagggtgaaattgatagtcaggggaaaatttggggagccccttaccgt
tggggaacgactgtgatagtttataaccgggaaaaactcaaatccttgggtattcaacct
caagattgggatgatttatggcggaaagaattaggcgatcgcatttctttgctcgaccaa
ccccgtgaagtcatcggcttaactttaaagaagttaggaaaatcctacaatacaactaaa
ctcagtacagttagcaacctagaaacagaacttaaagccttacatcaacaaaccaagttt
tatagttcaacccgttacctggaaccactgctaataggtgacacctggctagccgtaggt
tggtcaaacgaggttttaccttttattaatcgttatccgcaatttacagcctttgtgccc
aaatctggaacgtctctatgggcagatatctgggtaaaaccagggaatccttctgctcag
gagcaaaaaaatttagcagccacaaatttacctgatcagtggattgatttttgctggtca
gataatattgctcaaactattagtttattgactagggcaaattctcccattccggtgtca
attgatcagaagaatatttctagtgctttacgcaatgttttaatggcagatgctacaacc
ttgaatcaaagtgagtttatcttgccattagctgctaatgtcagccaagaatatggggag
ttctttgaaaaaatgcaagcatag
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