Candidatus Contubernalis alkaliaceticus: HUE98_00235
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Entry
HUE98_00235 CDS
T07972
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
calk
Candidatus Contubernalis alkaliaceticus
Pathway
calk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUE98_00235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calk03019
]
HUE98_00235
03009 Ribosome biogenesis [BR:
calk03009
]
HUE98_00235
Enzymes [BR:
calk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUE98_00235
Messenger RNA biogenesis [BR:
calk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUE98_00235
Ribosome biogenesis [BR:
calk03009
]
Prokaryotic type
rRNA helicases
HUE98_00235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
SWI2_SNF2
Helicase_RecD
Ddi2_HDD
CMS1
Motif
Other DBs
NCBI-ProteinID:
UNC90652
LinkDB
All DBs
Position
54954..56405
Genome browser
AA seq
483 aa
AA seq
DB search
MQIFEELGLSRSLLKAVSRMGFEAATPIQELAIPSALAGKDIIGQAQTGTGKTAAFAIPM
IEKIEQGTENIKALVVTPTRELAVQVAEEINTIGQTKGIKALPIYGGQDIVRQIRSLKNR
PQIIVGTPGRLMDHMRRKTIRLQQVCMVVLDEADEMLNMGFIEDIETILEGIPVDHQTLL
FSATMPKAVQNLAQRFMKNPEVIKIKSKEVTVPNTEQYYYEVHERQKFDVLCRVLDIQSP
DLAIIFGRTKRRVDELNDALNKRGYVAEGIHGDLTQAKRDSVMRNFKNGKTEILVATDVA
ARGLDISNVTHVYNFDIPQDAEWYVHRVGRTGRLGKPGIATTFVTPRELNQLRIIEKTTK
RKIIRQTVPTLSEALEGQQQIAMDKLIQVAENEDLRQYQELAATLLEERDSVTLLAAALK
ILTKEPDNTQVTLTEETPYRQKKSTGYKGGAQGNFRKPKFKGGRDDRRKKQYKKQDNKRD
NWA
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttttgaagagttgggcttaagccgctctttactcaaagctgtttcaaggatg
gggtttgaagctgctacacctatccaggagttggcgataccatcagctctggcaggaaaa
gatattatagggcaggcgcagacggggacgggtaagacagctgcttttgccattccaatg
attgagaagatagaacaggggacagaaaatatcaaggctctggtggttacccccaccagg
gaattggctgttcaggtggcggaagaaataaataccatagggcaaactaaagggattaaa
gctttacctatctatggagggcaggatatagtccggcagatcagatcccttaagaacaga
cctcaaatcatagtagggacaccgggtcgattaatggaccatatgaggagaaaaactata
cggcttcaacaagtgtgtatggttgtattggatgaagcggatgaaatgcttaatatggga
tttattgaggatattgagacaattttagaaggaattcctgttgatcatcaaacactgctt
ttttctgctaccatgcctaaggctgttcagaatttagcccaacggtttatgaaaaatccg
gaagtgattaagataaagtccaaagaagttactgttcccaatacggaacaatattattat
gaagtccatgaaaggcaaaagttcgatgttctctgccgtgtattagacatacagtctcca
gacttagcgataatttttggtaggaccaaaagacgggtagatgaattaaatgatgcttta
aataagcggggatatgttgcagagggaatccatggagatcttacccaggccaaacgggat
agtgtaatgcgaaactttaaaaatggtaagacggaaattttggtggctaccgatgtagct
gcccggggcctggacataagcaacgttacccatgtttataactttgatattcctcaggat
gcggaatggtatgttcaccgggttgggcgaaccggtcgtctggggaaacccggcattgcg
actacgtttgtgactccccgggagctcaaccagctgagaattatagaaaaaactacaaaa
cgaaaaattattagacagacggtacctacgttaagtgaggctttagaaggacagcagcaa
attgccatggataaactgatacaagttgcagaaaatgaagatctccgccaatatcaggaa
ttagccgcaacgctgctggaggaaagagactctgtaacccttttggcagcagccctaaaa
atacttaccaaagaacctgataacacacaggttactttgaccgaggagactccctacagg
cagaagaagtcaacaggatataagggaggagcacagggaaatttcagaaagcccaaattc
aagggcggcagagacgatagaaggaaaaagcaatataaaaagcaggataacaaaagggat
aattgggcgtaa
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