Candidatus Contubernalis alkaliaceticus: HUE98_01840
Help
Entry
HUE98_01840 CDS
T07972
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
calk
Candidatus Contubernalis alkaliaceticus
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calk03019
]
HUE98_01840
03009 Ribosome biogenesis [BR:
calk03009
]
HUE98_01840
Messenger RNA biogenesis [BR:
calk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUE98_01840
Ribosome biogenesis [BR:
calk03009
]
Prokaryotic type
rRNA processing factors
HUE98_01840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
TRAM
KH-I_KHDC4-BBP
KH_1
KH_2
S1
Motif
Other DBs
NCBI-ProteinID:
UNC90928
LinkDB
All DBs
Position
386418..388103
Genome browser
AA seq
561 aa
AA seq
DB search
MNNKIIVNCDNRETRVAVLEQGELVEIYIERPIHQRVVGNIYYGVVANVLPGMQAAFVDI
GLERNAFLYVDDVLLEDSDESSQGSRNKSIEELLRVGDKILVQVIKEPFGSKGARVTCQI
TLPGRYLVLMPTVKYIGVSRKIEKPEERQRLKNLGDTIKSEDMGLIVRTVAEGKKSEHLS
NDMEFLRKMWKKIQQRMTLKDAPALVHQDLNLIYRIVRDLFNDDIDQLLIDTKYEYEKVL
EILDYISCSLKNKIFYYRGEKPIFEKYNLENEIEKALRRTVWLNCGGYLVFDQTEALTVI
DVNTGKFIGSTNLEDTVFKTNMDAAKEISRQIRLRDIGGIIIIDFIDMSNEKHEKMVIQV
LEDNIKKDRTKAHVLGITNLGLVEMTRKKVRQGLDAVLMQPCPYCDGKGKIFSMEVMSGK
IERLLKKMLTEEEGEAILLEVNQNVAAMLIGSNGINLKKLEEETNKSIYIRGSDIMHIEK
FKVVMIGEEKEVSRLASPVNIGEVYLMKIEEPHLNNPYDGIARIQGFVIDVQAGGAYVGE
EVQVEITDVAKTYAKAKVMKQ
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataaaattattgtaaactgtgacaatcgggagaccagggttgctgtattagaa
cagggtgaactggtggaaatatatatagagcgtccaattcatcaaagggttgttggcaat
atttattatggagtggtggccaatgtgctgccgggaatgcaggcagcttttgtggatatc
gggttggagagaaatgcttttttatatgttgatgatgtgcttttagaagatagtgatgag
tcaagtcagggcagccgcaacaagtctatcgaggaactgttacgggtaggtgataaaata
ttagtgcaggttataaaggaaccctttggaagcaaaggagcccgggttacctgtcagatt
accttaccgggtcgttacctggtattaatgccaacagtgaagtatatcggggtttctcgg
aaaattgaaaaacctgaggaaagacagcgcttaaagaatcttggagataccataaaatct
gaggatatgggcttgatagtgagaaccgtggcggaaggaaagaaatcggaacatttaagt
aacgacatggagttcttgcggaaaatgtggaagaagattcaacaaaggatgacgttaaaa
gatgctccagccttggttcatcaggacttaaatcttatttaccgcattgtgagggacttg
tttaatgatgatattgaccagttattaatcgatacaaaatatgaatatgaaaaggtttta
gaaattctagactatatatcgtgctctctaaaaaataaaattttttattatcggggagaa
aaacctatctttgagaagtacaacttggaaaatgaaattgaaaaggctttaagaaggact
gtttggttgaactgtggagggtatctggtgtttgaccagacagaggctctcacggttatt
gatgtaaataccggtaaatttatcggcagcacgaatctggaggacacagtctttaaaacc
aatatggacgcggccaaggaaatatcccgacagatcaggcttcgggatatcggaggaatt
attattattgatttcattgatatgagtaacgagaaacacgaaaaaatggtaattcaggtg
ctggaagataatataaagaaagaccgtaccaaggctcatgtattgggaattactaacctt
ggattggttgaaatgaccagaaaaaaagtaagacaggggttggatgctgtcttaatgcag
ccctgtccttactgtgacggcaaaggtaaaattttttccatggaagtaatgagtgggaaa
attgaaaggctgttgaagaaaatgcttacggaagaagaaggagaggccatattgttagag
gttaaccagaatgtagcggccatgttaataggtagtaatggaatcaatttaaaaaagctg
gaggaggaaaccaacaaatctatttatattcgcggctctgatatcatgcatatcgaaaaa
tttaaagtggtcatgattggagaggaaaaggaagtttccaggctggcctctccggttaat
ataggagaggtttacctgatgaaaattgaagagccccacttgaataatccttacgatggt
attgcccggattcaaggttttgtgattgatgtgcaggcggggggtgcttatgtgggagag
gaagtacaagtagaaataacggacgtggctaaaacttatgcaaaagctaaggtgatgaaa
caataa
DBGET
integrated database retrieval system
