Candidatus Contubernalis alkaliaceticus: HUE98_01850
Help
Entry
HUE98_01850 CDS
T07972
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
calk
Candidatus Contubernalis alkaliaceticus
Pathway
calk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUE98_01850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
calk03021
]
HUE98_01850 (rpoC)
03400 DNA repair and recombination proteins [BR:
calk03400
]
HUE98_01850 (rpoC)
Enzymes [BR:
calk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUE98_01850 (rpoC)
Transcription machinery [BR:
calk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUE98_01850 (rpoC)
DNA repair and recombination proteins [BR:
calk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUE98_01850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UNC90930
LinkDB
All DBs
Position
392208..395888
Genome browser
AA seq
1226 aa
AA seq
DB search
MFDVNNFDAIKIGLASPGQIREWSRGEVKKPETINYRTLKPEREGLFCEKIFGPQRDWEC
HCGKYKRVRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRLGLLLDM
SPRALEKILYFAAYVVIDAGESGLTKKQLLTETEYRELLEQHSQLIKAGKGFRAEMGAEA
IKKLLEEIDLEQLSKELRAELRSTTGQKRIRAVRRLEVVEAFRKSGNSPYWMVLDVIPVI
PPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDA
LIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQ
CGLPKEMALELFKPFVMKKLVNDGLAHNIKSAKRMVEKVKPEVWDVLEEVIKDHPVLLNR
APTLHRLGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLML
SAHNILNPKDGAPVTTPTQDMVLGCYYLTIEKEGAKGEGKRFLHPQEAILAFHTGVIDLQ
AKICVNIRDYNKKIQNMSDSLNQGTAPIYLITTAGKLIFNEIFPEDFPYINSHNLVQAVS
QDDIISEKGVDIREIIKMRETRDTVKKELLGKLIALCFRKYGSTRTAEILDHMKKLGFSY
ATKAGVTVAIADIIIPEEKPAIIGSSEQEVQVIEKEFRRGLITEDERYSRVISVWTRARE
NVTEALMNNLDRFNPIFMMAHSGARGNVGQISQLAGMRGLMADPTGRIIDLPIKANFREG
LTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVSQDVIVREEDCGTENGIEVMEIK
DGNEIIEELGERLVGRYVIEDIIHPQTGQVIVKKNHLIDEEKGDEIIKSGLKQLNIRSVL
TCRSRYGVCVKCYGRNLATGMIVEIGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRIEELFEARKPKGLAIISEIEGTVEIREARNKREVKVMPQYGEPKVYNVPYGARLK
VANGDNISAGTELTEGSINPHDLLKVKGPRGVQLYLLQEVQRVYKFQGVDINDKHIEIII
RQMLKKVKAEDSGDTDLLPGGLVDVFQFEDVNREVEEQGGQPASARSVLLGITKASLATD
SFLSAASFQETTRVLTEAAIKGRVDPLLGLKENVIIGKLIPAGTGMSRYRNIRIRIPEQE
QDVLTEVIPEEETVESPAEMVDNTTV
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgatgttaataactttgatgctataaagattgggttggcttcccctgggcagatc
agggaatggtcccggggagaagttaaaaagccggagaccattaactacaggaccttaaag
ccggaacgggaggggcttttctgtgagaaaatatttggccctcagcgggattgggaatgt
cactgtggtaaatacaaaagggtccgatataaagggattgtgtgcgatcggtgtggggta
gaagtaacccggtctaaagtgcgtcgggaaagaatgggacacattgaactggctgcacct
gtttcccatatttggtatttcaaagggattcccagtcgcctcggcctccttctggatatg
tctccccgggctctggaaaagattttatactttgcagcttacgtggttatagatgccggt
gaaagcggtttgactaaaaagcagctgcttacagagacagaataccgggaacttttagaa
cagcatagtcagctgattaaggcaggcaaagggttcagggctgaaatgggagcagaagct
attaaaaagcttctggaagaaattgatttagaacagctttccaaagagcttcgggcagaa
ttgaggtcaaccaccgggcagaagagaatcagggcggtgcgccgcctggaggtggtagag
gcattccgtaaatcgggcaactctccatattggatggtcctggatgttattccggttatt
ccaccggatctgcggcctatggttcagctggatggaggtagattcgctacttcagattta
aatgacctttaccgcagggtgattaaccggaacaaccgcttaaaaagattgttagatttg
ggtgccccggatattatcgtgcgcaatgaaaagaggatgcttcaagaggctgtggatgcc
ttgatcgataatggccgccggggaaggccggtaacagggccgggaaatcgtcccttgaaa
tctttaagcgatatgttaaaaggtaagcagggccgctttcgtcagaatctgctgggaaaa
cgggtggattactcaggacggtccgtaatcgtggtggggccggaattaaagatgtaccag
tgtggtttgcctaaagaaatggctctggagttatttaaaccttttgttatgaaaaaattg
gtcaatgacggtttagcccataacataaaaagcgctaagcgcatggtagaaaaggttaaa
cctgaggtttgggatgtcctggaggaagttattaaggaccatccggtgctgttgaaccgg
gcgcctacactacaccgcttggggattcaagcgtttgaaccggtgctggttgagggaagg
gctatccaaatccatcctttagtttgtactgcttacaacgctgattttgacggagaccaa
atggccgttcatgttcctctgtctgcagaggctcaggcggaagccaggcttcttatgctt
tccgcccataatatcttgaatcccaaggatggtgctccggtgaccacccctacacaggat
atggttttaggttgttactatctgaccatagaaaaagaaggggctaaaggtgaaggtaag
cgtttcctccatcctcaggaggctattttggcctttcatacgggagtaattgacctgcag
gccaaaatttgtgttaatattcgagactataataaaaaaatacaaaatatgagcgattct
ttaaaccagggaactgctccgatatacttgattactacggcgggaaaactgatttttaac
gaaattttccctgaggattttccttatatcaattcccataatttggttcaggctgtttct
caagatgatataatctctgaaaaaggagtagatatcagggaaataattaaaatgagggaa
accagggatactgttaaaaaggagttgttaggtaagctcattgccctctgtttccgcaaa
tatggaagtactcggacagcggaaattttagaccatatgaagaaattgggcttttcctac
gctactaaggccggagttaccgtggctattgctgatatcataattccggaggaaaaacct
gctataattggatcttcagaacaggaggttcaagtgattgaaaaggagttcaggcggggc
ttaattaccgaggatgagaggtactcccgggtcatttctgtatggaccagggctcgggaa
aatgttaccgaagctttgatgaacaatctagatcgtttcaatcctatatttatgatggct
cattccggggctcggggtaatgttggacagatttctcagctggcggggatgcggggactt
atggcagaccctaccggtcggatcattgaccttcctattaaggctaatttccgagagggc
ctgacggtgttggaatattttatctctacccacggggccagaaagggactggcggataca
gctcttaagacggctgactccggatatttgacccgaaggctggtggatgtatcccaggac
gtaattgtccgggaagaggactgcggcactgaaaacggtatagaagtcatggaaatcaaa
gacggaaatgaaatcattgaagagctgggtgaacggttagtgggtagatatgtcattgag
gatattattcatccccagaccggtcaggttattgtgaagaagaatcatttgatagacgaa
gaaaaaggcgatgaaattataaaaagcgggttgaaacagctgaatatccgctcggttttg
acctgccgctcccgatatggtgtgtgtgttaaatgctatggccggaatctggccaccggg
atgattgtggaaatcggtgaatccgtagggattatagctgcccagtctattggtgaaccg
gggactcagcttaccatgcgtaccttccataccgggggtgtagccggggatgatattacc
cagggtctccccaggattgaagaactttttgaagccaggaaaccaaaaggattggctatt
atcagtgagatcgaagggactgtggaaatcagagaggccagaaacaagagagaagttaag
gtgatgcctcagtatggtgagcccaaagtatataatgtcccttacggagccaggttgaaa
gttgctaacggagataatatctctgccgggacggaattaacagagggctccatcaatccc
catgaccttttgaaagtaaaagggccccggggtgtacagctttatttgctgcaggaagtg
cagagggtttacaagttccagggagtggatatcaacgataagcatattgaaattataatc
cggcagatgctgaaaaaagtgaaggcagaggattccggggatacagacctgctgccggga
ggtctggtggatgtcttccaatttgaggatgtgaatcgggaagtagaggagcaaggaggt
cagcctgcttcagcccgttcggttctgctgggtataaccaaggcgtctctggctacggat
tctttcttgtcagctgcctcattccaggaaaccaccagggtgctcaccgaggctgccatc
aagggccgggtagatcccctgttagggttgaaagaaaacgtgattataggtaaactgatt
ccagcagggacagggatgtccaggtaccggaatattcgaatcaggatacctgagcaggaa
caggatgtgttgacggaggtaattccagaagaagaaactgtggaaagccctgcagaaatg
gttgacaacacgactgtgtga
DBGET
integrated database retrieval system
