Candidatus Contubernalis alkaliaceticus: HUE98_02525
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Entry
HUE98_02525 CDS
T07972
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
calk
Candidatus Contubernalis alkaliaceticus
Pathway
calk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUE98_02525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calk03019
]
HUE98_02525
03009 Ribosome biogenesis [BR:
calk03009
]
HUE98_02525
Enzymes [BR:
calk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUE98_02525
Messenger RNA biogenesis [BR:
calk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUE98_02525
Ribosome biogenesis [BR:
calk03009
]
Prokaryotic type
rRNA helicases
HUE98_02525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CMS1
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UNC91057
LinkDB
All DBs
Position
527141..528457
Genome browser
AA seq
438 aa
AA seq
DB search
MPTDFLSLGVKTELNEILKKQGVNVPTPVQIQAIPILLSGKDIVAQAQTGTGKTFAFLLP
ILQGINENKPYIQALIITPTRELAIQITSELKKLDLNAHVLAAYGGQDVERQIKKLKGSI
HMVVGTPGRILDHIRRGTITLSGVKMLVLDEADQMLHMGFLPDVEDIIRKTSPKRQTMLF
SATIPANIRTLARRYLKNPVDIQIKSKRITLDEIRQVVVATTDRGKQETLFKLIEEHRPY
LALIFCRTKRRVIALNEALLNQGYLSDELHGDLSQAKREQVMKRFREAKLQILVATDVAA
RGLDVEGITHVFNYDVPEDADSYIHRIGRTGRAGEKGLAITLATPRNTFQLQAIEKGIGM
TIETKGTIVGENKLNQIKKQRGKGAKGVKGAKGYQDKALKKQESQGKKPAKKHGRNQPSK
QDNKRSSKHSNSSKRRSK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
gtgccaactgactttttgtccttaggggttaaaactgaactaaacgaaatcttaaaaaaa
cagggggtcaatgttcccactcccgtgcaaatacaggcaattccaattctactctcggga
aaggatatcgtggcgcaagctcaaacaggcaccggcaagacttttgcttttttactgccg
atcttacaaggaataaatgaaaacaagccttatattcaggcattaataattactcccaca
agagaactagcaatacagattacctctgaattaaaaaaactagatcttaatgcccatgta
ctggctgcttacggcgggcaggatgttgaacgacagatcaagaagttaaagggatcaata
catatggttgttggtacaccagggcgaattctagatcatatccggcgggggaccataacc
ctttccggggtaaaaatgttagtccttgatgaggctgaccaaatgctgcacatgggtttt
ttgcctgatgtcgaggatataattagaaagacatcaccaaaacgacaaactatgctcttt
tcggcaacaataccggcaaatatacgtaccctggcaagacgttacctgaagaacccggtg
gatattcaaataaagagcaaaagaatcaccttagatgagattagacaagtggttgtagct
actactgaccgagggaagcaggaaactttatttaaactaattgaagagcatagaccatac
ttggcattgatattctgtcgtacaaaaagaagggttattgcacttaacgaagcccttctt
aatcaaggctatttatctgatgaattacatggggatttatctcaagcaaaacgagagcag
gttatgaagcgttttcgagaagcaaaacttcaaatacttgtggcaactgatgtggcagct
agaggtttagatgtggaaggtattactcatgtatttaattatgatgtccctgaggatgca
gatagctacattcatcgtattggcaggaccggaagagctggagaaaaagggttagcgatt
actttagcaacaccaagaaatacttttcaattacaggcaatagaaaaaggtattggcatg
acaattgaaacaaaggggacaattgttggtgaaaacaaattaaatcaaattaagaaacaa
aggggaaaaggggctaaaggcgttaaaggggctaaaggatatcaagataaagctctaaag
aaacaagaaagccagggaaaaaagccagcaaaaaaacatggaagaaaccaacctagtaag
caagataataaaagaagcagcaaacattctaattctagtaagcgaagaagtaagtga
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