Candidatus Contubernalis alkaliaceticus: HUE98_07665
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Entry
HUE98_07665 CDS
T07972
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
calk
Candidatus Contubernalis alkaliaceticus
Pathway
calk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUE98_07665 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calk03019
]
HUE98_07665 (recQ)
03400 DNA repair and recombination proteins [BR:
calk03400
]
HUE98_07665 (recQ)
Enzymes [BR:
calk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUE98_07665 (recQ)
Messenger RNA biogenesis [BR:
calk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUE98_07665 (recQ)
DNA repair and recombination proteins [BR:
calk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HUE98_07665 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
UNC91985
LinkDB
All DBs
Position
complement(1562434..1564209)
Genome browser
AA seq
591 aa
AA seq
DB search
MLEQAKKILKKYYGYDSFKPGQEKVIGSLLEGRDTLAVMPTGAGKSVCYQIPAAVFDGVT
IVISPLISLMKDQVDVLDNLGLPATFINSSLKGSEVKNRLAQAAQGNYKLIYVAPERLET
EDFVELLKGINVSFLAVDEAHCVSQWGHDFRPSYRKIGPFAEKLSKNILIGAFTATATEG
ITKDIGKFLNLKRPNVYVTGFDRANLSFAVLRGENKSRFVQDFLGEDRNKSGIIYTATRK
EVDNLFETLVRKGIKCGRYHAGMTEKERTSAQEAFLKDDIAIIVATNAFGMGIDKSNVRF
VIHNNMPKNMEAYYQEAGRAGRDGEYAECILLFSAHDIMLQKYLIEQTVFSPQRRTNEYK
KLQQMVDYCHTSRCLRKYILEYFGEEEIKDNCGNCSNCSEDYDSADITVEAQKILSCVFR
IKERFGATVVAEVLKGSQNKKVRQLGFNSLSTYGLMKDYTLQEIKDMINLLTAEGYLHLT
EGGFPVLKLGTGAAAVLKQKEKVWQKKRKRKEMVRDDTLFEKLRILRKEIADRENIPPYI
VFADSTLRELSALRPLDGESMLKVKGVGENKLARFGEEFLWVIRQHNTEEE
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgctggaacaagcaaaaaaaatactaaagaaatattatggttatgactcctttaagcca
gggcaggaaaaagtgattggatcgctgctggagggcagagatactttagcagttatgccg
actggagccgggaagtctgtttgctaccagataccggctgcggtttttgacggggtaacc
attgtaatttctccgctgatttctttgatgaaagaccaggtagatgttttggacaacctg
ggactgccggccacatttattaacagttctttaaaaggctctgaagtgaaaaatagattg
gcccaggcggctcaaggtaattacaagcttatttatgtagccccagagcggctggaaacc
gaagattttgttgaactgctgaaaggtataaatgtttcttttttggcagtggatgaagct
cattgtgtttcgcaatggggccatgatttcagacccagctatagaaaaataggtcccttt
gcggaaaagctttcgaaaaatattttaatcggagcatttaccgccacagctacggaagga
ataacaaaggatataggcaagttcctaaaccttaaaaggcccaatgtctatgtcaccggt
tttgaccgggctaacctgtcttttgctgttcttcggggtgagaataaaagtagatttgtg
caggattttcttggagaggataggaacaagtcaggaatcatttacaccgctactcgaaaa
gaagtggacaatttgtttgaaacattggttaggaaaggtatcaaatgcggcagataccac
gcaggcatgacagaaaaagagcggacctcggcacaagaagcttttctaaaggatgacata
gcgatcattgttgctaccaatgccttcggcatgggaattgacaaatccaacgtacgtttt
gtaattcacaataacatgcccaagaacatggaagcttattaccaagaagcaggacgagcc
ggcagggacggtgagtatgctgagtgcattttgcttttttctgctcatgatattatgctg
caaaaatatttaattgagcaaaccgttttttcgccccagcgccgtacaaatgaatataaa
aagcttcagcagatggtagattactgccatacctcaaggtgtttgcgtaaatatattctg
gaatattttggagaagaagaaattaaagataattgcggtaattgcagcaactgcagtgaa
gattacgactccgcagacatcacagtagaggcgcaaaaaatattatcctgcgtatttcgc
ataaaggagcgttttggcgctacggtggtggccgaagttttaaaaggttctcagaacaaa
aaggtaaggcaattaggatttaacagcctttccacctatggtttgatgaaagattatacc
cttcaggaaattaaagatatgataaacctgcttacagcggaaggttacctgcacttaact
gagggaggtttcccggtactgaaactagggactggtgccgctgcagttctgaaacagaaa
gaaaaggtctggcagaaaaaacgtaaaagaaaagagatggttagggatgataccttgttt
gagaaactacggattttgaggaaagaaattgctgacagagaaaatataccaccctatata
gtatttgcagacagcaccctgcgggagttaagtgctcttcgtcctctagatggagagtct
atgctcaaggttaagggtgtcggagagaataaactggcccgttttggtgaagagttttta
tgggtaattagacagcataatactgaggaagagtaa
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