Candidatus Contubernalis alkaliaceticus: HUE98_14025
Help
Entry
HUE98_14025 CDS
T07972
Name
(GenBank) diguanylate phosphodiesterase
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
calk
Candidatus Contubernalis alkaliaceticus
Pathway
calk02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HUE98_14025
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
calk02000
]
HUE98_14025
Transporters [BR:
calk02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
HUE98_14025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
DUF6921
Motif
Other DBs
NCBI-ProteinID:
UNC93928
LinkDB
All DBs
Position
complement(2797844..2799394)
Genome browser
AA seq
516 aa
AA seq
DB search
MFSAAGCQKESAEGPADTSDQDISQEEPENKEPLVIRLEGGDWGYSSPYTHYSRGPGIFK
MRLVFDSLLEKDEEGFIPWLAESWDIEDDGKTYIFNLRQGVKWHDGTEMTAEDVVFSFNY
FQEHPPVSIGSIMSDKGFLMEMEAVSPYQVKITTAEADATFLEQAGTARIIPKHIWENVD
NPQEYLEPEAVVGCGPYILTDYNKEHGTYRFEAFEDYWGPEPLVDVIEFVPVSDSILAFE
NREIDQTSVTTDLLSRFENDPEFSVVESPGFWGYRIIFNMENNEIFLNKAVRQAFSYAVD
SQELIDKIERGAAIPGNPGILSRHHVMYNPNVSEYDFDPDKARELIEQENLNNDLSFTLL
VGDDAEVRIGELLKEQFSKAGIEIKVESVDMKSRDSRIAEGQYQIALVGHGGWGGDPDYL
RTRFSSELSHWYSGTPGYVNDEVDRLLRAQIQETDAQKRKDMIFELQKILSEDVPEIPLY
NTTGYTVFSPDHYDGWMFMFDHHALSHSKLSYLTRE
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcgctgcaggatgtcaaaaggaaagtgccgaagggccggcagatacttcggat
caagatatctctcaagaggaaccggaaaataaggaaccattggtgatacgtttagaaggc
ggggactggggttattcttccccttacacccattattccaggggccccggaatttttaaa
atgcgtctggtttttgattccctgctggaaaaagatgaagaaggattcatcccctggctg
gccgagagctgggatattgaagatgatgggaaaacctatatttttaatctgcggcagggg
gtgaagtggcatgatggtactgagatgactgctgaggatgtggtcttttcctttaattat
ttccaggaacatcctcccgtatctattgggagtattatgtcggacaaaggttttttgatg
gaaatggaggcggtatctccttatcaggttaaaataactacagcggaagccgatgctact
tttttggagcaggcgggtacagcacggattattccaaagcatatctgggaaaatgtagat
aatccccaggagtatctggaaccagaggctgttgtgggatgcggcccctatatcctgact
gattataacaaggagcatggaacgtaccgttttgaggcttttgaggattattggggccct
gagcctttggtggatgtaattgaatttgtgccggtaagtgactccatcttagcttttgag
aatagagaaatagatcagacctcagtaactactgatttattgtcaaggtttgagaatgat
ccagaattcagtgttgtagaaagcccaggattttgggggtatagaattatatttaacatg
gaaaacaatgaaatattccttaacaaagcagtcaggcaggcattttcttacgctgtagat
tctcaagaacttatagacaaaatagaaaggggtgcagctatacctggtaatcccggtata
ctttcccggcaccatgtaatgtataatcccaatgtttctgaatatgattttgaccctgat
aaggccagagagcttattgagcaggaaaacttaaataacgatctgtcatttacactgctg
gtgggagatgacgctgaagtacgtattggagaattattaaaagagcagttttcaaaagct
ggaattgagattaaagtggagtcagtggatatgaagtccagagattcccgtattgcagag
ggacaataccagatagccctggtgggacatgggggatggggtggtgaccctgactatctc
cgaactcgtttttccagcgaattgagccactggtacagtggaacaccgggttatgttaac
gatgaggtggataggcttcttagagcacagattcaggagactgatgcacagaaaaggaaa
gatatgatttttgagctgcagaaaattttgtcagaggatgttccagaaattcctttatac
aacaccaccggatatactgtcttttctccggaccattacgatggttggatgttcatgttt
gaccatcacgctttgagccacagcaagctgtcatatcttacaagagaatag
DBGET
integrated database retrieval system
