Candidatus Contubernalis alkaliaceticus: HUE98_15575
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Entry
HUE98_15575 CDS
T07972
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
calk
Candidatus Contubernalis alkaliaceticus
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calk03019
]
HUE98_15575
Messenger RNA biogenesis [BR:
calk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUE98_15575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
CC2D2AN-C2
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
UNC93373
LinkDB
All DBs
Position
complement(3123692..3124702)
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AA seq
336 aa
AA seq
DB search
MGIIKKVQFVKSLKVGDRVDTLLAVREKNLQQYSKPSRAGEKFLRVFLSDTSGTITGVLW
DNAQEVSQIFKVGEVVHVTGQVTDYRGLQITIETLKKVNMKNIDPTYFQEVVKKSRREMM
EKVKSHINTYVNDPYLCRLLQEFLDDRDFNSQFIKAPGGRLIHHNYVGGLLEHSLEVMEI
CIQLLHLYPKYMNSSLLISGAVLHDIGKIKEYDMNSILFQYTDRGKLIGHITMGRDMVMK
KANKYKHFPEDIKLELEHMILSHHGKKEWGSPEIPRTINAFALFHADLVSARMNQFTGVI
QQSLENEQPWSDWNRFLERDVFIPNYLKEDRDTSHE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgggaataattaaaaaggtgcagtttgtaaaaagtttaaaagttggagacagggtagat
acattacttgcggtcagggaaaagaatttacagcaatactctaaacccagccgggcaggt
gagaaatttctacgggtttttttatcggataccagtgggactattacaggtgttctttgg
gacaacgctcaggaagtcagtcagatatttaaggttggggaggttgttcatgtcaccggg
caggtcactgactacaggggcctacaaatcacgattgaaacattgaaaaaggttaatatg
aaaaacattgatcctacttatttccaagaggtagttaaaaaaagccgtcgggaaatgatg
gaaaaagtcaagtctcatattaatacttatgttaatgatccttatctgtgtcggttgctt
caagaatttttagatgaccgtgattttaactctcagttcatcaaagcccccggaggaagg
cttatccatcataattatgtggggggattgttagagcacagccttgaggtgatggagatt
tgcattcaactgctgcacctctatcctaaatatatgaattccagtttacttatcagtggt
gctgttcttcatgatatcggaaaaattaaagaatacgatatgaacagtattttgttccag
tatacggaccgaggtaagctcattggccatatcaccatgggaagggatatggtgatgaaa
aaagctaataaatataaacattttccagaggatattaagctggagctagagcacatgatt
ttatctcatcatggcaaaaaagagtggggttccccagaaattcccaggaccataaatgct
tttgccttatttcatgctgatttggtcagtgctcggatgaatcagtttaccggggtgata
cagcaaagcttggaaaatgagcagccatggtcagattggaaccgttttttggaaagggat
gtatttattccgaattatcttaaagaggacagggatacttctcatgaataa
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