Candidatus Chlorohelix allophototropha: OZ401_000921
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Entry
OZ401_000921 CDS
T09929
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
call
Candidatus Chlorohelix allophototropha
Pathway
call03410
Base excision repair
call03430
Mismatch repair
call03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
call00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OZ401_000921 (recJ)
03430 Mismatch repair
OZ401_000921 (recJ)
03440 Homologous recombination
OZ401_000921 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
call03400
]
OZ401_000921 (recJ)
DNA repair and recombination proteins [BR:
call03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
OZ401_000921 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
OZ401_000921 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OZ401_000921 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
SirC_C
Motif
Other DBs
NCBI-ProteinID:
WJW67649
LinkDB
All DBs
Position
1:complement(1100983..1102746)
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AA seq
587 aa
AA seq
DB search
MSQADIPESGDPSSTLKGRRERIWVMPNPIPSEFLDRVSESGYGALIAQLLYNRNLRTPE
AIEYFFNADYSRLADPYLIKDMDRAVKRIQQALSAHETLAIYGDFDADGVTACSLLVQYF
RSLGVEVIPRIPHRVDEGYGLNPPALTRLHEQGVTLVITVDCGVSNVAEVAFASGLGMDI
IVTDHHRPPDPLPQAYAILNVRQEGCQYPYKGVAGVGMAFHLVRALSKAGIKGNGLKPSD
LLDLVALGTVADISPLNGENRVLVASGLRALNRTSRPGIIALIDAAGLKQGELEASSIGF
GLAPRINAAGRVDDAILAYQLLLTDSLSEARELANQLNSKNRERQDMLSTVLEEARYQVA
EKRLAEKNKLMLLSGTNWQAGIVGLVAGRLCEEYSRPVVVVERSGEHCKGSARSIYAFNI
IEALSECSDLLERFGGHRQAAGFTVAASNLAELESRLYKIADRMTDSDLQPRLLVDAIIE
PDQIMSAYTESRLLAPFGSENLQPLYACTGLKVREARPVGIDGSHLRLKLFNPHNMKTLE
GIAFRAGWRAVDMKPGKLIDVAFNLDQNMWHGQKRLEVYIKDMRFSA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaagcggatattcctgaatctggcgatccttcatctaccctaaagggcagacgt
gagcgcatctgggttatgcccaatccgattccgagcgaatttcttgatagagtctccgaa
tcaggatatggcgcgctcatcgcccaactcttatataaccgcaatcttcgcacccccgaa
gcgattgaatattttttcaatgccgactattcccgtttagctgacccttacctgataaaa
gatatggatagggcagtaaagcgcatccaacaggcgctatctgcccatgaaactctcgct
atttacggagatttcgacgcagacggtgtaactgcctgtagccttttggtgcaatatttc
aggtcgttgggagttgaagttataccgcgtattccgcaccgggttgatgagggttacggt
ttgaatccgcctgcccttacccgtttgcacgaacagggtgttacccttgttattacggta
gattgcggcgttagcaatgtggcagaggttgcgtttgccagtggactcggcatggatatt
attgtaacagaccaccaccgcccccccgacccattaccgcaagcctatgccattctcaat
gtcaggcaggaaggttgccagtacccttataagggggtagcgggtgtaggaatggctttc
catttggttagggcattaagtaaagctggtatcaaaggtaatgggctaaagccgagcgac
ctgcttgatttggtcgcgcttggcactgtggcggatatatctccactaaacggtgaaaac
agagtgttggttgctagcggtttgagggctttaaaccgcacctctcgcccaggtattatt
gcgttgattgatgccgcaggcttaaagcaaggagaacttgaagcgagttccattggattt
gggctagctcctcgtataaacgctgccggacgggtggatgatgcgattctggcgtatcag
ttacttctaaccgactcgttatcggaagcccgcgaactggctaaccagctaaattccaaa
aaccgtgagcgtcaggatatgctaagtaccgtactggaggaagcacgttatcaggtagcg
gagaaaaggctggctgagaaaaataaactgatgctgctcagtggtactaactggcaagcc
ggaatcgtggggttggtagccggtcgtctttgtgaggaatattctcgcccggtagtggtg
gtcgagcgtagcggtgagcattgtaaggggtcggcgcgaagcatctacgcttttaatata
attgaggctctaagcgagtgtagcgatttgctcgaacgcttcggcgggcatcgtcaggct
gccgggttcacggtagcagcttcaaacttagccgagttggaaagtcgcttatataaaatt
gccgacagaatgaccgactctgacttgcaaccgcgcttgctggtggatgcaatcattgaa
cctgaccaaattatgtctgcctatactgagagtcgcttattagcgccgtttggaagcgaa
aacttgcaaccgctctatgcctgtaccggactgaaggtgcgggaggcacgcccagtgggt
attgatggttcacacttgcgtttgaaattgttcaatccgcataacatgaaaacgcttgag
ggcattgcttttcgggcgggttggcgtgcggtggacatgaaaccgggaaaactcatcgat
gttgcgttcaatttagatcaaaatatgtggcatgggcagaaacggcttgaagtatatata
aaagatatgcgattctctgcctaa
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