Candidatus Chlorohelix allophototropha: OZ401_003676
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Entry
OZ401_003676 CDS
T09929
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
call
Candidatus Chlorohelix allophototropha
Brite
KEGG Orthology (KO) [BR:
call00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
call03032
]
OZ401_003676 (topA)
03400 DNA repair and recombination proteins [BR:
call03400
]
OZ401_003676 (topA)
Enzymes [BR:
call01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OZ401_003676 (topA)
DNA replication proteins [BR:
call03032
]
Prokaryotic type
DNA Topoisomerases
OZ401_003676 (topA)
DNA repair and recombination proteins [BR:
call03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OZ401_003676 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_Ribbon_TF
Zn_ribbon_RPB9
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
WJW68078
LinkDB
All DBs
Position
2:1345852..1348080
Genome browser
AA seq
742 aa
AA seq
DB search
MAAKSKLVIVESPTKAKTIGKYLGKGYTVKASYGHVRDLPKSKLGVDVEHDFVPQYLIPR
DKNAVVKDLKKEVKAADEILLATDPDREGEAIAWHLLSATGLATPENGKRIGRVVFHEIT
KEAVKEALKHPRDIDMNLVNAQQTRRILDRLVGYKISPILWKKVKKGLSAGRVQSVAVRL
IVDREREVAAFNPEEYWTIETDFRVEKGKNRKAAQFHAALNSINGQKASLKTEAEAAAVL
NELQGALYCVSDIRQRQISRNPSAPFTTSTLQQEANRKLNFTSKRTMGIAQSLYEGVELG
EEGALGLITYMRTDSTNVAAVAQQEARQVIEAKYGKEYMPEQPPVYTRKSKNAQEAHEAI
RPTSIARDPESLKPFLSPEQYKLYRLIWQRFLASQMAPAQLDSTSVDVKADTRPLTELVQ
WRYLFRATGSVIRFAGFLAVYQESLDEDAGEDELSKKALPALEIKEILDLVQLLPEQHFT
QPPARYTEASLVRALEEMGIGRPSTYAPTLSTVQERYYITKIEKHFQPTELGMLVNDLLV
DFFPDIVDINFTSQMEDNLDEIAGGQKQWQPVLAEFYKPFEITVVRAETEMSKVELKPEY
AGEDCEKCGRPMLIRMSKFGKFIACSGFPECRNAKPLLKSTKVACPQCHQGEILVKKTRK
RRIFYGCSLYPECTFSLWERPISQPCPECGNLMTLSGRNRAKCTSCGTLIDYEIPEEEQE
LPLVRVSPSSTIVTNVTEKAVS
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaagtcaaaactggttatagtggaaagccctaccaaagccaaaactattggc
aaatatttaggtaaaggctataccgtcaaagccagttatggacatgtacgcgatttgcct
aagagcaaattaggtgtggatgtcgagcacgattttgtgccccaatatcttattccacgc
gacaaaaacgcggttgttaaagatctaaaaaaagaagttaaagccgccgatgaaattttg
cttgcaaccgaccctgaccgtgaaggtgaggcgattgcgtggcatttgctcagtgctacc
ggtttggctacccctgaaaacggcaagcgtatagggcgtgttgttttccatgaaattact
aaagaagccgttaaggaagccctgaaacatccccgcgatatcgatatgaacttggtgaat
gcgcagcaaacccgccgtattctggacaggttagtaggttacaagattagccctatatta
tggaaaaaggtgaagaagggcttgagcgcgggcagggtgcaaagcgttgcggtgcgcctg
attgttgatcgcgaacgtgaggtagctgcatttaatcctgaagaatattggactatcgaa
accgatttccgggttgagaagggtaaaaatcgcaaagccgcccagtttcacgctgccctt
aacagtataaatgggcaaaaagcttctttgaaaactgaagcagaggcagcagcggtttta
aacgaactgcaaggcgctttatattgtgtaagtgatattcggcaacgtcagattagccgt
aacccctctgcgcctttcactaccagtactttgcaacaggaagctaaccggaagttaaat
ttcaccagcaaacgcactatgggaattgctcagtcgctctatgagggcgtagaattgggc
gaagagggcgctttaggtctaattacctacatgcgtaccgatagcaccaacgtagccgct
gtagcgcaacaggaagcacgccaagtaatagaggcaaagtatggcaaagaatatatgccg
gaacaacctccggtgtatacccgcaagtcaaaaaatgctcaggaagcgcatgaggcgatt
cgccctaccagcatagcccgtgacccggaaagtctcaaaccctttctaagtcctgaacaa
tataaactgtaccgtctcatttggcagcgtttcctcgccagccaaatggctcctgcgcaa
ctggacagcacttcagtggatgtaaaagctgatacgcgccccttaacggaattggtgcaa
tggcgttatcttttccgcgctactggctcggtaatccgctttgcaggctttctggcagtt
tatcaggagagtttggatgaagatgctggagaagatgaattaagcaaaaaggcgctacct
gctcttgaaattaaagaaatccttgatttggtacagctattgccagagcaacattttacc
cagcctcctgcgcgttatactgaggctagtttagtgcgtgcgctcgaagaaatgggcata
ggtcgtccgagtacctacgcgcctactctcagcacggttcaagagcgttactatatcacc
aaaattgagaagcacttccagccaactgaacttggtatgttggttaatgacctactggta
gattttttccctgatattgtggatattaattttaccagccaaatggaagataatctggat
gaaatagcgggcggtcagaagcagtggcaaccggtgttggctgaattctacaagcctttt
gaaatcacagtagtccgtgctgaaaccgaaatgagcaaggtagagcttaagcctgaatac
gccggggaagattgtgaaaagtgtgggcgacccatgctaattcgcatgagtaaattcggt
aagtttatagcttgttctggcttcccggaatgtcgcaatgccaagcctttgttgaaaagc
actaaagttgcgtgtccccagtgccatcagggcgaaatattggtgaaaaaaacccgcaag
cgccgtattttttatggttgctctctctaccccgaatgcacctttagcttgtgggaacgt
ccaatttcgcagccttgcccggaatgtggcaaccttatgaccttaagtgggcgtaatcgg
gcgaaatgtaccagttgtggtacgttaatagattatgagattcccgaagaggaacaggag
ttgcccctagtgcgagtttccccttcctctacaattgttacaaatgttacagaaaaagcg
gtgagttaa
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