KEGG   Candidatus Chlorohelix allophototropha: OZ401_004020
Entry
OZ401_004020      CDS       T09929                                 
Name
(GenBank) CDC48 family AAA ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
call  Candidatus Chlorohelix allophototropha
Pathway
call04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:call00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    OZ401_004020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:call03019]
    OZ401_004020
   03009 Ribosome biogenesis [BR:call03009]
    OZ401_004020
   04131 Membrane trafficking [BR:call04131]
    OZ401_004020
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:call04147]
    OZ401_004020
Messenger RNA biogenesis [BR:call03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     OZ401_004020
Ribosome biogenesis [BR:call03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    OZ401_004020
Membrane trafficking [BR:call04131]
 SNARE
  SNARE associated proteins
   Others
    OZ401_004020
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    OZ401_004020
Exosome [BR:call04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   OZ401_004020
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N AAA_16 RuvB_N AAA_14 AAA_22 AAA_5 AAA_2 TIP49 AAA_33 nSTAND3 AAA_18 CDC48_2 Mg_chelatase RNA_helicase IstB_IS21 AAA_17 AAA_28 AAA_7 AAA_24 NPHP3_N NB-ARC Parvo_NS1 Zeta_toxin Sigma54_activat AAA_3 TsaE AAA_25 ATPase_2 AAA_lid_PRS2_C AFG1_ATPase SLFN-g3_helicase Zot Vps4_C TECR_N
Other DBs
NCBI-ProteinID: WJW68409
UniProt: A0ABY9B5E1
LinkDB
Position
2:complement(1756241..1758493)
AA seq 750 aa
MSDTTDIFLKDDLLSPEPDESGKVPSMVLRVIEAAPRDAARSIARIDPNDMKLLGLDVGD
IIEIRGMRNTGAKVMPAFPPERGKRIIQIDGLIRRNCGTSIDNSVVVKKVEAGIAKTVVL
SPPEDSAPYRERGSQHLLYIKRLLEDLIVSQGDILRINLFGNTQQEFMVMGATPSGVPLK
VGPATALRIHTQRAEKQQRAPRRQGGVTYEDIGGLSKQLSRIREMIELPLKYPEVFERLG
IDAPKGVLLYGPPGSGKTLIARAVANETNAFFISVSGPEIIHKFYGESEANLRKVFSDAA
TRAPSIIFLDEIDAIAPKRESVMGEVEKRVVAQLLSLMDGLKSRGRIVVIGATNLPNLLD
PALRRPGRFDREISIGVPDRPGREEILTIYTRSMPLAMDVDVPKLAAITHGFVGADLEAL
CREAALSALRKIIPDIDFANSTIPYDELMNLTVDMSDFMSALKEIEPSAVREVYTEVPDV
SWEMVGGLQEIKDALREAVEWPLKYENLFRNTNTTPPRGIMLYGPPGVGKTLIAQALASE
TEVNFISIKGPELLSKWVGESEKAVREIFKKARQAAPCLIFFDEIDALAPVRGSRVDNGV
SERVVAQLLTEIDGIEGMKGVVLLAATNRAELVDPALLRPGRFDLKIQIPAPDLYARRQI
LEVHARQKPLQDYSILDKLALETEGMVGADLAALCNHAAMVAIRRCVTEFEGSGSTNEMS
EALITDIDFEVALGTLRRNTLPSFEKESVE
NT seq 2253 nt   +upstreamnt  +downstreamnt
atgagcgatacaaccgatattttcttaaaagacgacttattatcgcctgaaccggatgaa
tccggcaaagttccaagcatggttctacgggtgattgaagctgccccgcgagatgctgcc
cgtagcattgcccggattgacccgaatgatatgaagctgcttgggctggatgtgggcgat
attatcgagatacgcggcatgcgcaacactggcgcaaaggtgatgcccgccttccccccg
gaacgtggcaagcgcattatccaaattgacgggcttattcggcgcaattgcggcacgtca
atagataatagcgtagtggtgaaaaaggtcgaggcggggatcgccaagacggtggtttta
tctcctcctgaagatagcgccccctaccgagagcgcggttctcagcatttactttacata
aaacgattactggaagatttaatcgtatcgcaaggtgatatactgcggattaaccttttt
ggcaacactcagcaggaatttatggtaatgggcgctactccttcgggcgtaccgctcaag
gtagggcctgctactgctttgcgtatccatacgcagcgtgccgagaagcaacagcgtgcc
cctcgccgacaaggtggggtaacttacgaggatataggcggactgagcaagcagttgagt
cgtatccgcgagatgatagagttacccttgaaatacccggaagtgttcgagcggttggga
attgatgcgcccaaaggggtattgttatatgggccccccggttcaggcaaaaccctgatt
gcgcgagcggtagcgaacgaaaccaacgccttttttatcagtgtgagcggtccggaaatc
attcacaagttttacggcgaaagcgaagcgaacttacgcaaggtttttagcgatgccgct
actcgcgcccctagcattatctttttggatgagattgatgccattgcccccaaacgagag
tcggtgatgggcgaagtggagaagcgagtggtagcacaattgctgtcactcatggatggg
ctgaagagtcgcgggcgcattgtggtcatcggtgcaaccaatctgcccaatctccttgac
cctgctttgcgtcgtcccggacgctttgatcgggaaatttcaatcggtgtgccggatcgc
cccggacgtgaggagattctcactatctacacccgcagtatgccgctggcaatggatgtg
gatgtgccaaaactggcggcgataacgcatggctttgtaggggctgatttggaagcgctt
tgtcgtgaggcggctctcagcgcgttgcgtaagattatccccgatatagatttcgccaac
tctacgattccctatgatgagttgatgaacctgacggtggatatgagcgatttcatgtcc
gcgctaaaagaaatcgagccaagcgcggtgcgcgaagtttataccgaagtgccggatgtt
tcgtgggaaatggtgggcggtttacaggaaataaaagatgctttgcgcgaagctgtagaa
tggcccctcaaatatgaaaacctattccgcaataccaacactacccctccacgtgggatt
atgctctatggcccgcccggtgtaggcaaaactctgattgcacaggcgcttgccagtgaa
accgaggtgaactttatctctatcaaaggcccggaattgctcagcaaatgggtgggcgag
agcgaaaaagcggtgcgcgaaattttcaagaaagcgcgtcaagctgccccttgtctgatc
tttttcgatgaaattgatgcgcttgccccggtgcgcggttcacgggtggataacggcgtt
tccgaacgggtggtggcgcaattgctcaccgagattgacggaatcgagggcatgaagggc
gtagtattgttggcagcaaccaatcgggcagaattggttgaccccgcgctgttgcgaccg
ggtcgctttgacctgaaaattcagattcctgcgcctgatctatacgcacgccgtcagatt
ctagaggtgcatgctcgccaaaaaccgctgcaagattactccattctggataaactggcg
cttgaaacagagggtatggtgggcgcagaccttgccgcgctgtgcaatcatgcggcgatg
gtagcaattcgccgttgcgtgactgaatttgagggaagcggtagcaccaatgaaatgtcg
gaagccttgattaccgatattgattttgaggtggcgttaggcactttgcgccgcaacacg
ctgccttcttttgaaaaagagtcggtggaatga

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