Candidatus Chlorohelix allophototropha: OZ401_004020
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Entry
OZ401_004020 CDS
T09929
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
call
Candidatus Chlorohelix allophototropha
Pathway
call04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
call00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
OZ401_004020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
call03019
]
OZ401_004020
03009 Ribosome biogenesis [BR:
call03009
]
OZ401_004020
04131 Membrane trafficking [BR:
call04131
]
OZ401_004020
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
call04147
]
OZ401_004020
Messenger RNA biogenesis [BR:
call03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
OZ401_004020
Ribosome biogenesis [BR:
call03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
OZ401_004020
Membrane trafficking [BR:
call04131
]
SNARE
SNARE associated proteins
Others
OZ401_004020
Autophagy
Aggrephagy
Other aggrephagy associated proteins
OZ401_004020
Exosome [BR:
call04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
OZ401_004020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_14
AAA_22
AAA_5
AAA_2
TIP49
AAA_33
nSTAND3
AAA_18
CDC48_2
Mg_chelatase
RNA_helicase
IstB_IS21
AAA_17
AAA_28
AAA_7
AAA_24
NPHP3_N
NB-ARC
Parvo_NS1
Zeta_toxin
Sigma54_activat
AAA_3
TsaE
AAA_25
ATPase_2
AAA_lid_PRS2_C
AFG1_ATPase
SLFN-g3_helicase
Zot
Vps4_C
TECR_N
Motif
Other DBs
NCBI-ProteinID:
WJW68409
UniProt:
A0ABY9B5E1
LinkDB
All DBs
Position
2:complement(1756241..1758493)
Genome browser
AA seq
750 aa
AA seq
DB search
MSDTTDIFLKDDLLSPEPDESGKVPSMVLRVIEAAPRDAARSIARIDPNDMKLLGLDVGD
IIEIRGMRNTGAKVMPAFPPERGKRIIQIDGLIRRNCGTSIDNSVVVKKVEAGIAKTVVL
SPPEDSAPYRERGSQHLLYIKRLLEDLIVSQGDILRINLFGNTQQEFMVMGATPSGVPLK
VGPATALRIHTQRAEKQQRAPRRQGGVTYEDIGGLSKQLSRIREMIELPLKYPEVFERLG
IDAPKGVLLYGPPGSGKTLIARAVANETNAFFISVSGPEIIHKFYGESEANLRKVFSDAA
TRAPSIIFLDEIDAIAPKRESVMGEVEKRVVAQLLSLMDGLKSRGRIVVIGATNLPNLLD
PALRRPGRFDREISIGVPDRPGREEILTIYTRSMPLAMDVDVPKLAAITHGFVGADLEAL
CREAALSALRKIIPDIDFANSTIPYDELMNLTVDMSDFMSALKEIEPSAVREVYTEVPDV
SWEMVGGLQEIKDALREAVEWPLKYENLFRNTNTTPPRGIMLYGPPGVGKTLIAQALASE
TEVNFISIKGPELLSKWVGESEKAVREIFKKARQAAPCLIFFDEIDALAPVRGSRVDNGV
SERVVAQLLTEIDGIEGMKGVVLLAATNRAELVDPALLRPGRFDLKIQIPAPDLYARRQI
LEVHARQKPLQDYSILDKLALETEGMVGADLAALCNHAAMVAIRRCVTEFEGSGSTNEMS
EALITDIDFEVALGTLRRNTLPSFEKESVE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacaaccgatattttcttaaaagacgacttattatcgcctgaaccggatgaa
tccggcaaagttccaagcatggttctacgggtgattgaagctgccccgcgagatgctgcc
cgtagcattgcccggattgacccgaatgatatgaagctgcttgggctggatgtgggcgat
attatcgagatacgcggcatgcgcaacactggcgcaaaggtgatgcccgccttccccccg
gaacgtggcaagcgcattatccaaattgacgggcttattcggcgcaattgcggcacgtca
atagataatagcgtagtggtgaaaaaggtcgaggcggggatcgccaagacggtggtttta
tctcctcctgaagatagcgccccctaccgagagcgcggttctcagcatttactttacata
aaacgattactggaagatttaatcgtatcgcaaggtgatatactgcggattaaccttttt
ggcaacactcagcaggaatttatggtaatgggcgctactccttcgggcgtaccgctcaag
gtagggcctgctactgctttgcgtatccatacgcagcgtgccgagaagcaacagcgtgcc
cctcgccgacaaggtggggtaacttacgaggatataggcggactgagcaagcagttgagt
cgtatccgcgagatgatagagttacccttgaaatacccggaagtgttcgagcggttggga
attgatgcgcccaaaggggtattgttatatgggccccccggttcaggcaaaaccctgatt
gcgcgagcggtagcgaacgaaaccaacgccttttttatcagtgtgagcggtccggaaatc
attcacaagttttacggcgaaagcgaagcgaacttacgcaaggtttttagcgatgccgct
actcgcgcccctagcattatctttttggatgagattgatgccattgcccccaaacgagag
tcggtgatgggcgaagtggagaagcgagtggtagcacaattgctgtcactcatggatggg
ctgaagagtcgcgggcgcattgtggtcatcggtgcaaccaatctgcccaatctccttgac
cctgctttgcgtcgtcccggacgctttgatcgggaaatttcaatcggtgtgccggatcgc
cccggacgtgaggagattctcactatctacacccgcagtatgccgctggcaatggatgtg
gatgtgccaaaactggcggcgataacgcatggctttgtaggggctgatttggaagcgctt
tgtcgtgaggcggctctcagcgcgttgcgtaagattatccccgatatagatttcgccaac
tctacgattccctatgatgagttgatgaacctgacggtggatatgagcgatttcatgtcc
gcgctaaaagaaatcgagccaagcgcggtgcgcgaagtttataccgaagtgccggatgtt
tcgtgggaaatggtgggcggtttacaggaaataaaagatgctttgcgcgaagctgtagaa
tggcccctcaaatatgaaaacctattccgcaataccaacactacccctccacgtgggatt
atgctctatggcccgcccggtgtaggcaaaactctgattgcacaggcgcttgccagtgaa
accgaggtgaactttatctctatcaaaggcccggaattgctcagcaaatgggtgggcgag
agcgaaaaagcggtgcgcgaaattttcaagaaagcgcgtcaagctgccccttgtctgatc
tttttcgatgaaattgatgcgcttgccccggtgcgcggttcacgggtggataacggcgtt
tccgaacgggtggtggcgcaattgctcaccgagattgacggaatcgagggcatgaagggc
gtagtattgttggcagcaaccaatcgggcagaattggttgaccccgcgctgttgcgaccg
ggtcgctttgacctgaaaattcagattcctgcgcctgatctatacgcacgccgtcagatt
ctagaggtgcatgctcgccaaaaaccgctgcaagattactccattctggataaactggcg
cttgaaacagagggtatggtgggcgcagaccttgccgcgctgtgcaatcatgcggcgatg
gtagcaattcgccgttgcgtgactgaatttgagggaagcggtagcaccaatgaaatgtcg
gaagccttgattaccgatattgattttgaggtggcgttaggcactttgcgccgcaacacg
ctgccttcttttgaaaaagagtcggtggaatga
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