Candidatus Chlorohelix allophototropha: OZ401_004260
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Entry
OZ401_004260 CDS
T09929
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
call
Candidatus Chlorohelix allophototropha
Pathway
call03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
call00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OZ401_004260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
call03021
]
OZ401_004260 (rpoC)
03400 DNA repair and recombination proteins [BR:
call03400
]
OZ401_004260 (rpoC)
Enzymes [BR:
call01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OZ401_004260 (rpoC)
Transcription machinery [BR:
call03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OZ401_004260 (rpoC)
DNA repair and recombination proteins [BR:
call03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OZ401_004260 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
SNIPE
Motif
Other DBs
NCBI-ProteinID:
WJW68646
UniProt:
A0A8T7M9L8
LinkDB
All DBs
Position
2:complement(2022317..2026900)
Genome browser
AA seq
1527 aa
AA seq
DB search
MLEVNNFNAIRISLASPEQIRAWSHGEVTKPETINYRTLKPERDGLFCERIFGPTKDWEC
YCGKYKRVRYKGVICDKCGVEVARSKVRRERMGHIQLAAPVSHIWFVKGTPSRLGLLLDI
SPRNLERVLYFATYVVTEVDQEEINKLIERAKQEGDERVKQLEAESQAKISEKRKGLEGD
VSNLNTSAATRKTQLEEELQLAVSGFEAEVEEVREKVKGLRNKAAPTEIAFRTSIIARKD
QMLNDDRLAEMDEIIGREREKIEHDIRIQQSNTQTLAEGERDQIQYVKQQEIEQVLGKLN
SDIAAVRAEVENTIDELESIHRLQLLSENKYRDLRSIFFDKLNVPAPFKAGMGAEAVYQV
VKEMDMDKMASELRQEIQILNGQRKKKATKRLRVVEAFRKSGNRPEWMIFTILPVIPPDL
RPMVQLDGGRFATSDLNDLYRRVINRNNRLQRLKELGAPEIIIRNEKRMLQEAVDALIDN
GRRGRVVSGSGKHKLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLP
KKMALELFKPFVMRRLVERGYAHNIKSAKRIVERVKPEVWDVLEEVIKDYLVLLNRAPTL
HRLGIQAFEAVLIEGSAIQLHPLVCKAYNADFDGDQMAVHVPLSRKAQEEARERLLSVYN
VLRPSNGQPVITPHQDIILGCYYLTIARPGTSGEGKVFSTFEEALLAYETGIIHSPTSEE
RPLYIEAPIRVGTPEHLVESVAERQRRDNEVAIKKGEPVPYPVLNGKLYDTTIGRILFIE
NLPRKLQTFFVREINDWVGAARLDEIMAECYRVYGPVPTAVVADRLKKLGFKYSTKGGIS
IGVEDVEIPPIKDELLREADKKVDAIERQFKRGLLTETERYKQVIRVWDDTKDKVTEAVR
KHLNPFGSLYMMTTSGAKGNIRQISQMSGMRGLMADPTGKTIEIPVRSNFREGLSVMEYF
ITTHGARKGLADTALRTADSGYLTRRLVDVAQDVIIGIYDCGTEQGIVLSEADAIESGRI
TEKFDKRIIGRMAAIAVTHPETGEVLVERNGEIDEVVARKVGAAGIKQIYVRSPLACMVQ
FGVCQLCYGRNLANGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITSGLPR
VEELFEARVPKSQAILSEIDGAVEIFNEGEMRKIKVVSVEVYPDPHDIPLNYELVVREGD
EVQEGAVLARSNLVEDEGVITSRLAGRVSVPAVNKVVIRHEEREERDYDVPAASEMRVQP
GERVKAGDPLTSGSSNPQEILHILGTEAVQRYLIDEVQRVYRSQGVNTNEKHMEIMVRQM
LRKVQVETPGDTDMLPGELFDRFAYEEFNSRVLAEGGEPATAQTVLLGVTKSALKTDSFL
SAASFQETTRVLTEAAIQGSIDRLRGLKENVIIGKLIPAGSGIRHKPKKKTKVSLSELLD
IDPDNEEHLRRLEELEEEIEEMPEHKPEILMQLPSVAVVVNGERSAEQEIELEALMSRVA
ERLTLPDDDDLDEEVDLDVEPDEEDEE
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagtaaacaattttaacgcaattcgcatcagcctagcttcgccggagcaaatc
cgcgcttggtcgcatggagaagtaaccaagcctgaaaccatcaactaccgcacccttaaa
ccggagcgcgatggtttgttttgcgaacgcatctttggtcctaccaaagactgggaatgc
tattgcggaaaatacaaacgggtacggtataaaggggttatctgcgacaagtgcggcgtg
gaagttgcccgcagcaaagtgcgccgcgagcgtatgggtcatatccagcttgctgccccg
gttagccatatctggtttgtaaaaggtacgcctagccgtttgggtttgttgctggatata
tcaccccgcaacctagagcgcgtgctgtatttcgccacctatgtggtaactgaggtagat
caggaagagattaacaagctgattgaacgcgccaagcaagaaggcgatgagcgggtcaag
caacttgaggcagaatcacaggctaagattagcgaaaagcgcaaaggtctggaaggggat
gtcagcaatctcaataccagcgcggctactcgcaaaactcagcttgaagaagaattgcaa
ctggcagtcagcgggtttgaagccgaagtggaagaagtacgggaaaaagttaaggggctg
cgcaacaaggctgcgccgactgaaattgctttccgcaccagtatcattgcacgcaaggat
cagatgctgaatgatgatcgccttgccgagatggatgagattatcggtagagagcgcgag
aaaatcgaacacgatattcgcatccagcaatccaatacccaaactttggcagaaggtgag
cgcgaccagattcagtatgtgaagcagcaggagatcgaacaggttctcggcaagctaaac
tctgacatcgcggcggttcgcgctgaagttgagaatactattgatgagcttgaaagtatt
catcgccttcagttgctcagcgagaacaaataccgcgatttgcgctcaatcttcttcgat
aagctgaatgtgcctgcgcctttcaaggcgggtatgggcgcggaagcggtctatcaagtc
gtcaaagaaatggacatggataaaatggcgagtgaacttcgccaagaaatccaaatcctg
aacggacagcgcaagaaaaaagctaccaaacggttgcgggtggtggaagccttccgcaag
agcggcaaccgccctgaatggatgattttcaccattcttccggttatccccccagacttg
cgcccgatggtacaacttgacggtggtcgtttcgccaccagcgatttgaatgacctgtat
cgccgggttatcaaccgcaacaatcgtttgcaacgccttaaagaattgggcgcacctgaa
atcatcattcgcaacgaaaagcgcatgttgcaagaagcggtggacgcgctgattgataac
gggcggcgcggacgagtggtaagcggtagcggtaagcacaagctaaagagcctcagcgat
atgctgaaaggcaagcaaggtcgtttccgccaaaacttgctcggtaaacgtgtggactac
tctggacgttccgtaattgtggtagggcctgacctcaagttgcatcagtgcggtttgccc
aagaaaatggctttggaacttttcaagcctttcgtaatgcgccgtctggtagaacgcggt
tacgcccacaacatcaagagtgcgaagcgcattgttgagcgcgtcaagccggaagtttgg
gacgtgttggaagaggtaatcaaggattacttggtactgttgaaccgcgctcctacgctg
caccgtttgggtatccaagcgtttgaggcagtgctgattgagggtagcgcaatccaattg
cacccgctcgtttgtaaggcatataacgccgacttcgacggtgaccaaatggcagttcac
gtgccgctttcgcgaaaagcgcaggaagaagcccgcgaacgcctgctatcggtatataac
gtgctgcgcccttccaacggtcagccggttattaccccgcatcaggatattattctaggg
tgctactacctgacgattgcgcgaccgggtacttccggtgaaggcaaagtattttcaact
tttgaagaggctttgctggcatacgaaacgggtattatccattcgcctaccagcgaagaa
cgtcctttatatatagaagcgccgattcgggtaggtactcccgaacatttggtggagtcg
gttgcagaacgacaacgccgtgacaatgaagttgccattaaaaaaggcgagcctgtgccg
tatccggttttaaacggtaagctttatgatactaccatcgggcgtattctgttcattgaa
aatctaccgcgcaaattacaaaccttctttgtgcgtgagattaacgactgggtaggggcg
gctcggctcgatgagattatggcagagtgttaccgggtgtatgggccagttccaaccgca
gtggtggcagaccgtctcaagaaattgggcttcaagtattctactaagggtggtatcagc
atcggggtggaagacgtagaaattccgccgattaaggatgagttgctgagagaagccgat
aaaaaggtagatgcgattgagcgtcagttcaaacgcggtcttttgactgaaaccgagcgt
tacaagcaggtcatcagagtgtgggatgataccaaagataaggttaccgaagcggtgcgc
aaacaccttaacccctttggttcgctctatatgatgactacttccggcgcgaaaggtaac
attcgccagatcagccagatgagcggtatgcgcggtttgatggctgacccgactggtaag
accatcgaaattccggtgcgctcaaacttccgcgaaggtctttccgtgatggaatacttc
atcactacgcacggcgcgcgcaaaggtcttgccgataccgcgctacgtaccgccgactcc
ggttatctaacccgccgtttggtggacgtggctcaggatgtaattatcggtatttacgac
tgtggcacagagcaaggcattgttttgagcgaggcggatgctatcgagagcgggcgcatc
accgagaaattcgacaagcgtatcatcgggcgtatggcggcaattgctgtcacccatcct
gaaaccggcgaagtgctggtggaacgcaacggtgagattgacgaagttgtagcgcgtaag
gtcggcgcagccggtatcaaacagatttatgtccgttcacctttggcttgtatggttcag
tttggcgtttgccaattgtgctacgggcgcaaccttgcgaacggcaagttggtagatatc
ggcgaggcagtgggtatcattgccgcccaaagtatcggtgaacccggtacccaattgacc
atgcgtaccttccataccggcggtgtcgcaggtagtgatattaccagcggtttgcctcgc
gtggaagaattgttcgaagcgcgtgttcccaagagccaagcaattctcagcgaaattgat
ggcgcagttgagatattcaacgaaggggaaatgcgtaaaatcaaagtagtttcggttgaa
gtttatcccgacccgcacgatataccgctcaattatgagttggtagtgcgcgagggtgac
gaagtgcaagaaggtgcggtacttgcgcgcagcaatctggttgaggatgagggcgtaatt
acctcgcgcctcgctggtagggtatccgttcctgccgtcaataaggtggtcatacgccat
gaggagcgtgaagaacgcgattatgacgtaccggcagcttccgaaatgcgggtgcaaccg
ggcgaacgggtgaaagccggtgaccctttgaccagcggtagcagcaatccgcaagaaatt
ttgcatattcttggaaccgaagcggtgcagcgttacctcattgatgaagtacagcgcgtt
tatcgctcacaaggtgttaataccaacgaaaagcacatggagattatggttcgccagatg
ctccgcaaggtgcaggttgaaacacccggcgataccgatatgcttcccggtgagttgttc
gatcgctttgcctacgaggagtttaacagtcgggttttggcagaaggcggcgaaccggca
accgcgcaaacggtgttgctgggcgttaccaaatctgctctaaaaaccgatagcttcctc
tcagccgccagcttccaagaaactacccgtgttctgaccgaagcggctattcagggtagt
atcgaccgcttgcgtggtttgaaggaaaacgtcattatcggtaagctcattccggctggt
tcgggtatccgacacaagcccaagaagaagacgaaagtctctctttctgagttgctggat
attgacccggataacgaagagcatttgcgaaggctggaagaactcgaggaagaaatcgag
gagatgccggagcataagcccgaaatcctgatgcaattgccgtctgtagcggtagttgtt
aacggtgagcgcagcgccgagcaagagatcgaacttgaggcattgatgagccgcgtagcg
gaacgtctaaccttaccggatgatgacgatctcgatgaagaagttgacctcgatgtagaa
ccggatgaagaagacgaggagtag
DBGET
integrated database retrieval system
