Calothrix sp. NIES-2098: NIES2098_03100
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Entry
NIES2098_03100 CDS
T08374
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES2098_03100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caln03021
]
NIES2098_03100
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_03100
Enzymes [BR:
caln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES2098_03100
Transcription machinery [BR:
caln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES2098_03100
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES2098_03100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BAY07197
LinkDB
All DBs
Position
complement(399892..403950)
Genome browser
AA seq
1352 aa
AA seq
DB search
MTNEKAVFRNRVVDKGQLRNLISWAFVNYGTARTAVMADKLKDLGFRYATKAGVSISVDD
LMVPPSKRSLLEAAEEEIRATEARYQRGEITEVERFQKVIDTWNGTSEALKDEVVVHFKK
TNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGIPLRAMVEGGKTKIPL
ATRLLGRVVAEDVVDPKTKELIAPRNTPVSDELAAKIQKSGVTEVFARSPLTCEAARSVC
QHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRSKNDG
TIRLPRKLRTRPYRTRHGEDALFVEANGVIVLEPKKDGTDSTAVNQEIHVTQGSTLYISD
GQQVKQGQLLAEVALGGRTTRANTEKAVKDVASDLAGEVQFAEVVPEQKTDRQGNTTTTA
ARGGLIWILSGEVYNLPPGAELVVRNGDAIATNGVLAETKLTTLHGGAVRLPEATPGKST
REIEIITASVVLDQATVTVQSSQGRNNYLVSTGNNQVFNLRATPGTKVQNGQVVAELIDD
RYRTTTGGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEETHEVNKDISLLLVEDGQFV
EAGTEVVKDIFCQNSGVIEVTQKNDILREVVIKPGELLMVDDPEAVIGRDNTFIQPGEEF
QGTVATELRYIQYVESPEGPALLSRPVVEFAVPSNPDVPSTTSVSQQTGRSIQLRAVQRL
PYKDSERVKSVEGVELLRTQLVLEIEQEGEQDHNASPLAADIELIPDPENVDVQRLQLVI
LESLVIRRDIAADATQGSTQTSLEVQDGQTIAPGAVVARTQILCKEGGTVRGVQKGTENV
RRCLVLRESVDKIIVNTNVQPNVKVGDLIVEGAELAPGVFAPESGQVIDIKNTAASSAAS
ESALSTKNYSVSIRIGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPR
IEELLEARKPKEACILCRRAGEVKVVYGDGDEAIAVKVVEPNGVVTDYPLGPGQNLVVTD
GSHVAAGQPLSDGPSNPHEILEVFFSLGSEDGVYACASHALQKVQTFLVNEVQLVYQSQG
IDIADKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPV
LLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNA
YEETGTIDDYAALDSSSVLDEVDDPLDMVLDDRTARTYNLDSPSLVEPTFGGRRAERSIL
DDDDLIADEVTDLVEEEEEDDYEEDDEDDFDE
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgaaaaggcagtttttcgcaatcgcgtagttgataaaggtcaattgagaaat
ttgatttcttgggccttcgtaaattacggtacggcgcgtaccgcagtcatggcggacaaa
ttgaaagatttgggatttcgctatgcaactaaagctggcgtctccattagcgtagacgat
ttaatggtgccaccttccaagcgatcgctcctagaagcagcggaagaagaaattcgcgct
acagaagctcgttaccaacgtggggaaattacagaagtagaacgcttccaaaaagtaatt
gatacctggaacggtactagcgaagccctaaaagatgaagtagtcgtccacttcaaaaag
accaatcccctcaactcggtgtacatgatggccttctccggcgcgcggggtaacatctcc
caagttcggcagttggtagggatgcggggactaatggcagatcctcaaggggaaattatt
gacttgccaatcaaaaccaacttccgtgaaggtcttaccgttacagagtatattatctct
tcttacggtgcccggaaaggcttggtagatacagctttacggactgctgactctggttat
cttacccggcgtctagtggacgtatcccaggatgtaattatccgcgaaattgattgcggt
actactagaggcattcccctacgggcgatggtagaaggcggaaaaacaaaaattcctcta
gctacacgtctactaggaagggtagtagcagaagatgtagtagatcctaaaaccaaagaa
ctaatcgcgcctcgcaataccccagtttctgatgaattggccgcaaaaatccaaaaatcc
ggcgtaactgaagtattcgcgcgatcgccccttacttgtgaagcagcgcgttcggtttgt
caacactgctacggctggagtttagcccatgccaaaatggtagatttgggcgaagccgtc
gggattattgctgctcaaagtatcggcgaacccggaacccagctaaccatgcggacattc
cacacaggtggtgtatttaccggggaagtagcgcaacaagtgcgttccaaaaacgatggt
actatccgcttacccaggaaattacgtaccagaccctaccgtactcgccacggtgaagat
gctttatttgtagaagccaacggcgtaattgttttggaaccgaagaaagatggtactgac
agcacagcagtcaaccaagaaattcacgtcacccaaggttctacactatacatcagcgat
ggacaacaggtaaaacagggtcagctattagcagaagttgcccttggtggtcggacaact
cgtgctaacacggaaaaagcagtaaaagatgtagcctctgacttagcaggtgaagtacag
tttgcagaagttgtacccgaacaaaaaacagaccgccaaggcaatactacaaccacagcc
gcacgcggtggtttgatttggattttgtctggtgaagtgtataacttgccgcctggtgca
gaattagtcgtaagaaatggcgatgcgatcgctaccaatggcgtactcgcagaaaccaaa
ttaactaccttgcatggtggtgcagtccgcttgccagaagctacacccggtaagagtact
agggaaattgagattatcaccgcatctgtggttttagaccaagccacagtcaccgttcaa
agctcccaaggtcgtaataactacttggtttccactggtaataaccaggtatttaacctt
agagctactcccggcacaaaagtgcaaaatggtcaagtggtagccgaattaattgatgac
cgctatcgcactaccactggaggcttcctgaaatttgctggtgtagaagttcagaaaaaa
ggtaaagccaagctgggttatgaagtggtacagggtggcacattgctgtggattcctgaa
gaaacccatgaagtgaataaagatatttccttactattagtggaagacggacagtttgta
gaagccggcaccgaagtagttaaggatatcttctgtcaaaacagcggtgtgatcgaagtt
acgcagaaaaacgacatcttgcgggaagttgtaattaaaccaggcgaactgctaatggta
gacgatcccgaagcagtcatcgggcgagacaacacttttattcagccaggggaagaattc
caaggtacagttgccacagaattgcgctacatccagtatgtagaatcgccagaagggcca
gctttattgagccgtccagtggtggagttcgctgttcctagcaatcctgatgtgccttct
accacatcagttagtcaacaaactgggcgttcaattcaattgcgggcagtacaaagacta
ccttacaaagattccgaacgtgtcaagtctgtggaaggtgtagaactactgcgtactcaa
ctagttttggaaattgagcaggaaggcgaacaagaccataacgcttctcccttagcagcc
gatatcgagttaatcccagatcctgagaacgtagatgttcagcgcttacagttggtaatt
ctggagtccttagtaattcgtcgcgacatcgccgctgacgctacccaaggtagtacccaa
acctccctagaagtacaagatgggcaaaccatcgccccaggcgcagttgtagcccgtacc
caaatcttgtgtaaagaagggggtacagtacggggcgtccaaaaaggcacagagaatgtc
cgccgctgtttggtgttacgtgaaagtgttgacaaaatcatagtcaatactaatgtccag
cccaatgtaaaagtgggagacttgatcgttgaaggtgcagaacttgccccaggcgtcttt
gctcccgaatctggacaagtgatagatatcaagaatactgctgctagttctgctgctagc
gaatcagcgctcagtactaaaaactactccgtttctatccgcattggtcgtccctaccga
gttagccctggcgctgtgttgcaaatagaagatggggatttggtacagcgtggtgataat
ttggtgttgctggtatttgaacgtgccaaaacaggggacatcattcaaggtttacctcgg
attgaggaactactagaagcccgcaaacccaaagaagcttgtatcttgtgccgtcgggct
ggagaagtaaaggtagtttacggtgatggcgatgaagcgatcgcagttaaagtagtagaa
ccgaatggagtcgtcaccgattatcctctcggccccggacaaaacttagtggtgacagat
ggttcccatgtagcagcaggacaacccctcagcgatggcccttccaacccccacgagatt
ttggaagtcttctttagcttgggttccgaagacggggtttacgcttgcgctagccatgct
ttacagaaagtgcaaacattcctagtgaacgaagtgcaattggtgtatcaatcacaaggt
attgatattgctgacaaacacattgaagtaattgttcgccagatgaccaataaagtccgg
atagatgatggtggcgacaccaccatgcttccgggagaattggtagaattgcgccaagtt
gagcaggtgaacgaagcaatggcaattactggcggtgcgagggcacagtatactccagta
ttattagggataactaaagcatccttgaacaccgacagcttcatttctgctgcctccttc
caagaaaccaccagagtattaaccgaagccgccattgaaggtaaatctgactggctgcgg
gggttaaaagaaaacgtgattatcggacgattgattcctgcgggaactgggtataacgcc
tatgaagaaacaggaacaatcgatgattacgcggcgctggatagtagcagcgtcttagat
gaagttgacgatccgttagatatggtgctagatgaccgcacagctcgcacctataactta
gattctccttctcttgtcgaacctacatttggtggtagacgtgccgaacggtctatttta
gatgacgatgacttaattgctgatgaagtcaccgaccttgtagaagaagaggaagaggat
gattacgaggaagacgacgaagacgatttcgatgaataa
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