Calothrix sp. NIES-2098: NIES2098_03110
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Entry
NIES2098_03110 CDS
T08374
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES2098_03110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caln03021
]
NIES2098_03110
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_03110
Enzymes [BR:
caln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES2098_03110
Transcription machinery [BR:
caln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES2098_03110
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES2098_03110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAY07198
LinkDB
All DBs
Position
complement(404042..405919)
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AA seq
625 aa
AA seq
DB search
MRHAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDSQ
LQGVEVGIGAEALLHLLADINLEQEAESLREEIGTAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLNIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLE
EVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGKPIITPSQDMVLGAYYLTAENPGATKGAGRYFASLDD
VIMAFQQEQIDLHAYIYVRFDGEVESDGPDTEPLEVTENSDGSRTLLYKYRRVREDAQGN
LLSQYVRTTPGRVIYNKAIQEALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagacacgcccaaactaatcagtttgactacgtaaaaatcggcttggcatcaccagaa
cgcattcggcagtggggcgaacgcactttgcctaacggtcaggttgttggtgaagttacc
aagccagagacgattaattaccgtactctcaagccggagatggacggcttattctgcgaa
cgtatttttggcccagcgaaagattgggaatgccattgcggtaaatataagagagtacgt
catagaggtatagtctgcgaacggtgtggtgtagaagtaacagagtcacgggtgcggcgg
caccgtatgggatatatcaagctggcagcaccggtagcccacgtctggtatctcaaaggg
attcctagttatatttccattctgctggatatgcctttgcgggatgtggaacaaattgtt
tatttcaactcttatgttgttcttagtccaggcaatgccgaaactttaacttacaaacag
ctactcagtgaagatcagtggctggaaattgaagaccaaatttatagtgaagattcgcag
ctacaaggcgtagaagtaggtattggggctgaagctttattgcatttgcttgctgatatt
aatttagaacaagaagctgaaagcctgcgggaagaaattggtactgctaaaggacaaaag
cgggcaaagttaattaaacgcctacgggtaattgacaacttcatcgctactggttccaaa
ccagagtggatggtgatggctgttatcccggtgattccccctgacttacgtccaatggtg
cagctggatggtggtcggtttgctaccagcgatttaaacgatttgtatcgtcgagtaatt
aatcgcaataatcgtctggcacgcctacaagaaattttggcaccagaaattattgtccgc
aacgaaaagcggatgttgcaagaagcagtagacgctttgattgataacggacgccgggga
cgcaccgtagtcggtgctaataaccgtcctttgaaatccttatcggacattattgaaggt
aagcaaggacgtttccggcaaaacttgttaggtaaacgggttgactactccggtcgttct
gtaattgtggtggggccgaaattaaatattcaccaatgcggtttgcctagggaaatggca
atcgagctatttcaaccctttgtgatcaatcgcttaattcgtagcggtatggtaaataac
atcaaagctgcgaaaaaactgatctcccgtaacgaccccagcgtgtgggatgtattggaa
gaagtgattgaaggacacccagtactactaaaccgggcaccaacactgcaccgcttaggg
attcaagcattcgagccaattttggtagaaggtagagctattcaactccatcccttagtt
tgtccagcatttaacgctgactttgacggcgaccaaatggcggtacacgtacccctgtct
ttagaaagtcaggcagaagcacggctgttgatgctggcttctaacaatatcttgtcgcca
gctactggtaagccaattatcacacccagccaagacatggttttgggagcatactattta
accgcagaaaacccaggtgctaccaaaggggcgggacggtattttgcttctctcgatgat
gtaattatggctttccagcaagagcaaattgacttgcacgcctatatctacgtgcggttt
gatggcgaagtagaatcagacgggccagatacagaaccgctggaagttaccgaaaacagt
gatggtagccggactctgctctataaataccgccgagttagagaagacgctcaagggaat
ttgctgtctcagtatgtccgcacgacaccaggtcgcgtgatttacaacaaggcaattcaa
gaagcactagcaagttaa
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